PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496081.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 414aa    MW: 46610.1 Da    PI: 9.1315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-19245294356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  XP_004496081.1 245 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 294
                     8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.16E-30243303No hitNo description
SMARTSM003801.3E-34244307IPR001471AP2/ERF domain
PROSITE profilePS5103221.957244301IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21244301IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-30244302IPR001471AP2/ERF domain
PRINTSPR003676.1E-10245256IPR001471AP2/ERF domain
PfamPF008471.1E-11245294IPR001471AP2/ERF domain
PRINTSPR003676.1E-10267283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEDTFPKMET ITQKKLPTCL QQMETTTGSK YLEDTIIRRA SYSLTSSQHH VHVFKTELNS  60
STQKPFLFTS NSTSMKEEVP LYTLVNQIPP KFNGHHHEDI YRFNSISNSN FLASNIKHTF  120
VPLNLLETLP TSTITQNSNQ PTTPLPSSSS SSSSSSSSAT PKYPNLTLFL NQPSMLYSSN  180
STSHIKSNEF TSTNSHQTYP ISQLGLTQQH QTYDDSHKMN KSFNENWLSV TKTQPMKYSG  240
RGKLFKGVRQ RHWGKWVAEI RLPRNRTRVW LGTFDTAEDA AIAYDTAAYI LRGECAQLNF  300
PNLKHVIHAN SLNGTTASLV EAKLQAISQG VSSNRKSTVS TEKSNNVHSV ENDKDSTMMK  360
ELKFGTQGNK VGDETNQRNK SIQNEMSDME AVQLSRMSSL DMDIIWNELL VSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21240301163ATERF1
3gcc_A2e-21240301163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667071e-122AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496081.10.0ethylene-responsive transcription factor ERF062
TrEMBLA0A1S2XYW00.0A0A1S2XYW0_CICAR; ethylene-responsive transcription factor ERF062
STRINGXP_004496081.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-48ERF family protein