PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25774.7 Da PI: 5.1569 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.2e-18 | 64 | 114 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +++Wv+e r+p++n + r++lg++ t+e+Aa+a++ a++ l+g XP_004496025.1 64 IYRGVRARD-NNKWVCEMRVPNNN--KSRIWLGTYPTPEMAARAHDVAALTLRG 114 69****999.8*********9766..5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.31E-26 | 63 | 124 | No hit | No description |
Pfam | PF00847 | 9.5E-13 | 63 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-27 | 64 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-29 | 64 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 64 | 124 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.285 | 64 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-7 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-7 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDDIFMSSLN YATQQHLNIS SSSSSSETSY STNRTSSNEE VILASTRPKK RAGRRVFKET 60 RHPIYRGVRA RDNNKWVCEM RVPNNNKSRI WLGTYPTPEM AARAHDVAAL TLRGKSACLN 120 FADSAWRLRL PETTDAVEIR RAAMEAAQLF VVEDKQCEQQ SVGEEQVVPV VTSEYDEEMN 180 DLILSIANEP LRSPPPSMTD YYGGNWRDDY NIDMYDTQVS LWNFST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00104 | PBM | Transfer from AT1G63030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146573 | 2e-68 | AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496025.1 | 1e-170 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9SGJ6 | 3e-57 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A1S2XYS1 | 1e-168 | A0A1S2XYS1_CICAR; dehydration-responsive element-binding protein 1E-like | ||||
STRING | XP_004496025.1 | 1e-169 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 1e-57 | ERF family protein |