PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495882.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 293aa    MW: 33503.6 Da    PI: 7.9047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495882.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.3e-184592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lv++++ +G g+W+t+a + g++R++k+c++rw++yl
   XP_004495882.2 45 KGPWTLEEDTILVNYITTHGEGHWNTVACCAGLRRSGKSCRLRWLNYL 92
                     79********************************************97 PP
2Myb_DNA-binding49.21.2e-1598141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
   XP_004495882.2  98 RGNITLQEQILILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 141
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4264092IPR017930Myb domain
SuperFamilySSF466895.62E-3042139IPR009057Homeodomain-like
SMARTSM007171.7E-124494IPR001005SANT/Myb domain
PfamPF002498.4E-154592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-204699IPR009057Homeodomain-like
CDDcd001675.52E-94792No hitNo description
PROSITE profilePS5129422.16593147IPR017930Myb domain
SMARTSM007171.8E-1397145IPR001005SANT/Myb domain
PfamPF002495.6E-1498141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-22100145IPR009057Homeodomain-like
CDDcd001679.46E-10102141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTPTTETVNQ QTKPTLTRFF TASLMRVMKD VSTKLNQLNE TDLRKGPWTL EEDTILVNYI  60
TTHGEGHWNT VACCAGLRRS GKSCRLRWLN YLRPDVRRGN ITLQEQILIL DLHSRWGNRW  120
SKIAQHLPGR TDNEIKNYWR TRVMKQAKQL KCDVNSKQFR DILRYVWMPR LLERVQSDPN  180
GPDDILPRNA MHNSVLETEG PKQNNSSSVL SSTSSDSSVE FQVPSKLAQN DSLEMLGHDD  240
PAQKGSELCS SFNNQVGNNG GGGDSLESLW NDESMWFLQQ LSDDLQIKYN SFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23421474108B-MYB
1h8a_C9e-234213924120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495882.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684881e-122EF468488.1 Medicago truncatula MYB transcription factor MYB61 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495882.20.0transcription factor MYB78-like
SwissprotQ10MB43e-80MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1S2XYZ70.0A0A1S2XYZ7_CICAR; transcription factor MYB78-like
STRINGXP_004495882.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-76myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]