PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495581.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 378aa MW: 42199.7 Da PI: 4.4137

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.4	1.9e-34	166	220	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_004495581.1 166 KPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 220 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-32	163	222	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.091	163	223	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-17	165	220	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-25	166	220	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-10	168	219	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-20	253	297	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MSSSFPSSSM QAASINSNIR SVGHMFSTXA ELPDNILFSS ASEAHSTTFV SPPQEIDAIS 60 WGTDPIENIL QLPDNVPFQN DQVEYNGSYV LDGNGKPTDF KEWVDQLMSD DDSLQPNWNA 120 LLGDNNNNNN IAEPKPKETQ VSLQQYVPSK EVNDLPNSVS TTSQPKPRMR WTPELHEAFV 180 EAVNQLGGSE KATPKGVLNL MKVEGLTIYH VKSHLQKYRT ARYKPESSEE IPEKKLASIE 240 EMTSLDLKTT KGITEALRLQ MELQKRLHEQ LEIQRNLQIQ IENQGKRLQM MFEQQIKSDD 300 PSAPLSSDVL PSPVENLENS NEGHEKIGIS GSTPPNMPEE SFQDASIKQR GEDAQIIDEL 360 ELGEDQLAAP PTKRVKTD

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MSSSFPSSSM QAASINSNIR SVGHMFSTXA ELPDNILFSS ASEAHSTTFV SPPQEIDAIS  60
WGTDPIENIL QLPDNVPFQN DQVEYNGSYV LDGNGKPTDF KEWVDQLMSD DDSLQPNWNA  120
LLGDNNNNNN IAEPKPKETQ VSLQQYVPSK EVNDLPNSVS TTSQPKPRMR WTPELHEAFV  180
EAVNQLGGSE KATPKGVLNL MKVEGLTIYH VKSHLQKYRT ARYKPESSEE IPEKKLASIE  240
EMTSLDLKTT KGITEALRLQ MELQKRLHEQ LEIQRNLQIQ IENQGKRLQM MFEQQIKSDD  300
PSAPLSSDVL PSPVENLENS NEGHEKIGIS GSTPPNMPEE SFQDASIKQR GEDAQIIDEL  360
ELGEDQLAAP PTKRVKTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-32	166	224	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495581.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB573722	1e-101	AB573722.1 Lupinus albus LaMYB-CC3 mRNA for MYB-CC transcription factor, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027189768.1	0.0	protein PHR1-LIKE 1
Swissprot	Q8GUN5	4e-82	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A3Q7XQN8	0.0	A0A3Q7XQN8_CICAR; protein PHR1-LIKE 1
STRING	XP_004495581.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.3	9e-76	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]