PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494832.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 579aa    MW: 64582.9 Da    PI: 6.6863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13408454455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_004494832.1 408 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 454
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-5556248IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.22E-17403464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-14407457No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16408463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10408454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKVKEVASTL RFLLLNEEDK SMVGAVLGSQ AFDFLTTNCL SNEPVLLSIA TSDDSLQNKL  60
SDLVENPNYS TNFNWNYAIF WQLSRSKSGE IVLGWGDGCC REPNEEEKRG GVGNNSNLSM  120
EEEEGMKQSL RKRVLQKLHT VFGGSDEDEE NYAFGLDRVT DTEMFFLASM YFSFPKGYGG  180
PGKCFASGKY LWLKKSDISD YCVRSFLAKS AGIQTVVLVP TDFGVVELGS VRMVPESFDL  240
LNTVKSLFPI STSLQSSLYP SRVMHEGRVH ESGVSNGVLV PKVVVNVNNG RTHFREKLAF  300
RKMDNSINFP SGRNGFHDSS WRLNQGQPEI FTPNGVRKDF RLNQPQREVQ MQIDFSGANS  360
RPSVRPVNAE LELTVDVEAS VKEDQASDER RPRKRGRKPA NGRDEPLNHV EAERQRREKL  420
NQRFYALRAV VPNISKMDKA SLLGDAIAYI NELQAKLGIM ESERVTNGIS PLKDGSILEA  480
NSRSENRHQQ DVVIQALQDE VIVKVSCPLD IHPVSKVIET FKEAQISVVE SKLAAANDTI  540
HHTFVIKSQG SEQLTKDKLI AAFSKESNAS QIQTLSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-30402465265Transcription factor MYC2
5gnj_B8e-30402465265Transcription factor MYC2
5gnj_E8e-30402465265Transcription factor MYC2
5gnj_F8e-30402465265Transcription factor MYC2
5gnj_G8e-30402465265Transcription factor MYC2
5gnj_I8e-30402465265Transcription factor MYC2
5gnj_M8e-30402465265Transcription factor MYC2
5gnj_N8e-30402465265Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389397RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494832.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494832.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1S2XUS10.0A0A1S2XUS1_CICAR; transcription factor bHLH13-like
STRINGXP_004494832.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-173bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]