PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493938.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 466aa    MW: 51441.9 Da    PI: 6.1392
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17139188155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_004493938.1 139 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 188
                     78*******************......55************************997 PP
2AP240.19e-13231281155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ +Aa+a+++a+ k +g
  XP_004493938.1 231 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELDAARAYDKAAIKCNG 281
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9139188IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-16139198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-17140197IPR001471AP2/ERF domain
SMARTSM003801.3E-32140202IPR001471AP2/ERF domain
CDDcd000185.90E-12140198No hitNo description
PROSITE profilePS5103217.794140196IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-16231290IPR016177DNA-binding domain
CDDcd000183.94E-25231291No hitNo description
PfamPF008474.4E-8231281IPR001471AP2/ERF domain
PROSITE profilePS5103215.435232289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15232290IPR001471AP2/ERF domain
SMARTSM003804.3E-31232295IPR001471AP2/ERF domain
PRINTSPR003674.6E-6233244IPR001471AP2/ERF domain
PRINTSPR003674.6E-6271291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLDLNLNADS AFDNYTLPLS AAQMESSGSF DSSVVNTADT EDSCSYGDAY AYNFAILNNN  60
STIDNATISG ELQLSTAGEA GVRTIQLFPA NETGISPSES EGWLKFSSDH HGGVPEQTVV  120
APRPQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD  180
RAAIKFRGVD ADINFNVSDY DDDIKQMSNF TKEEFVHILR RQSTGFSRGS SKYRGVTLHK  240
CGRWEARMGQ FLGKKYIYLG LFDSELDAAR AYDKAAIKCN GREAVTNFEA SSYEGELLSQ  300
SDNKDGKRNL DLNLGIAPPS NSDDQMMNMH HSGSGLQVQR SWDDMPVDKS VMFEDSGSIS  360
LNGQPSYGFS MPSNLFPMCK ERAIENRMEA ASVPKWAWQL QSPYNGSTLI PPFSAAAASS  420
GFPSPTTVPS SAADSQIHYP NMTFLHPHFP PPMTNSTNIS PFYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493938.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA91e-106AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A1S2XSQ60.0A0A1S2XSQ6_CICAR; ethylene-responsive transcription factor RAP2-7-like
STRINGXP_004493938.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-107related to AP2.7