PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493736.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 300aa    MW: 32401.5 Da    PI: 6.4054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10141185554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  XP_004493736.1 141 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 185
                     99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-15138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANNPSDAPA SDDFFEQILR LPTFASADSG LTNSDLGLTT APMMLQLNSA DANHHLASGG  60
SFHQPVYQLG LSLEQGKGVF LKPDEASGSG KRFLNDVVDA RPNNNNVFHG QPMHTTVPAA  120
PHPPAMRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIVD  180
YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSIESYKS NGDQEEGGEG GRNGPAWDKW  240
SNDGTEKQVA KLMEENVGAA MQFLQSKALC IMPISLASAI YQSQPPDSSS IVKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066805e-85AP006680.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT45D03, TM0375a, complete sequence.
GenBankFJ3797465e-85FJ379746.1 Lotus japonicus putative basic helix-loop-helix protein BHLH3 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493736.10.0transcription factor UNE12 isoform X1
SwissprotO227681e-124UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S2XU730.0A0A1S2XU73_CICAR; transcription factor UNE12 isoform X1
STRINGXP_004493736.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-103bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]