PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 268aa MW: 29342.6 Da PI: 5.6598 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.8 | 2.5e-33 | 35 | 89 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_004493286.1 35 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 89 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.884 | 32 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-32 | 33 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.23E-17 | 34 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-26 | 35 | 90 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 37 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.2E-24 | 124 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MVPHKSQGGA EQLANVGVLN GSAVKNVAPA GGSGKQRLRW TSDLHDRFVD AITQLGGPDR 60 ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG KDSKDEKRNS GDSNSGAESS 120 PGLQINDALR MQMEVQKRLH EQLEVQKQLQ MRIEAQGKYL QKIIEEQQKL GSTLTASETF 180 PLPHEKQNHP QSEPSGSSDA LADTFSPLKK QRIDEGSKDG FDASQVPRKT AQKNDCNVGL 240 MDPNLYGDDA GLGFDLETEN EEDNESEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-24 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493286.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ007311 | 0.0 | HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493285.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 5e-70 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1S2XR95 | 0.0 | A0A1S2XR95_CICAR; myb family transcription factor PHL7-like isoform X1 | ||||
STRING | XP_004493285.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-72 | G2-like family protein |