PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004493136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 37993.1 Da PI: 9.71 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.5 | 2.2e-52 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd el+ +yL+kk+++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ XP_004493136.1 8 LPPGFRFHPTDAELILHYLRKKIASIPLPV-SIIAEVDIYKLDPWELPAKASFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAS 101 79****************************.89***************999999****************************************9 PP NAM 96 ........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfykg+ pkg+kt+W+mheyrl XP_004493136.1 102 lpsggrrsHDNIIGVKKALVFYKGKPPKGVKTNWIMHEYRL 142 999887776677***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-64 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.187 | 8 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 9 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MGTPQSNLPP GFRFHPTDAE LILHYLRKKI ASIPLPVSII AEVDIYKLDP WELPAKASFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA SLPSGGRRSH DNIIGVKKAL 120 VFYKGKPPKG VKTNWIMHEY RLVDNNKPIK LKDSSMRLDD WVLCRIYKKS KCALSLTEAE 180 TMVGDVDQAK ETQIKDTLFQ ITKNSTSPNQ NTLMSQKSMS FSNLLDAMDY SMLSSFLSEN 240 HSNPSGIGSS TSFNTENFNQ PSSQINTNNN YMFQKNTSKQ QLSNIDEDTL LYQSKKYLNS 300 SCNFPNINSQ YENYLMKQSL LNQQLILGPH LQFQG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-72 | 5 | 173 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-72 | 5 | 173 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-72 | 5 | 173 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-72 | 5 | 173 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-72 | 5 | 173 | 17 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-72 | 5 | 173 | 14 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-72 | 5 | 173 | 14 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004493136.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493136.1 | 0.0 | NAC transcription factor 47 | ||||
Swissprot | Q84TD6 | 1e-107 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A1S2XSZ5 | 0.0 | A0A1S2XSZ5_CICAR; NAC transcription factor 47 | ||||
STRING | XP_004493136.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-109 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
---|---|---|---|
|