PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492501.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 507aa    MW: 56564.8 Da    PI: 7.3808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1677133255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta +Aa a+++a+k+++g
  XP_004492501.1  77 NFRGVRQRI-WGKWVAEIREPIN-GkhvgeKANRLWLGTFTTAHDAALAYDKAAKAMYG 133
                     69****998.**********855.44876666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-3076142No hitNo description
PfamPF008471.5E-1176133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2777142IPR001471AP2/ERF domain
SMARTSM003803.3E-3677147IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1777141IPR016177DNA-binding domain
PROSITE profilePS5103221.61477141IPR001471AP2/ERF domain
PRINTSPR003672.4E-87889IPR001471AP2/ERF domain
PRINTSPR003672.4E-8107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MKIDTVSGER KSRKRRSGGR TDSVEDTLEK WKKYNRQQQQ KLGFGDNGVE LVHKVPAKGS  60
RKGCMRGKGG PQNSDCNFRG VRQRIWGKWV AEIREPINGK HVGEKANRLW LGTFTTAHDA  120
ALAYDKAAKA MYGPSARLNF PNGSPPSSTA GSAESLNGED LAKAEELESN LRQSHEENKI  180
FSNDFAVDDS EEAKEVIRNK KSKKMVHQGS YKNVKFETPR ENERLESELE KVLENSGIGG  240
ECFHVQKEAI NTDMNLGADC SSSDGVENGT LVKSEETAGG LVEDLKFFEL SCSNHFLGNL  300
QNMLPDSNTR PNSEHYDIKT KDSFEKKHKN EVTSAEIKEF CRGTGKSSRI SHGQSQNEQN  360
KNGHFDGMKS ELKGLECKLR GQSNDEAQIV VPYMPGIHLF GGDSVGPIER MSQVEDLNYN  420
TNKNTKLKEK GNNGSTLHGF SSGKSRKLSD LSQQLQKLGS YLPENWNNRQ FADLEVGYDY  480
SFLSPDYDFG LLEEKKLLDV CFSHIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1777141260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1518750.0CU151875.4 M.truncatula DNA sequence from clone MTH2-49J7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492501.10.0uncharacterized protein LOC101505842
TrEMBLA0A1S2XPF40.0A0A1S2XPF4_CICAR; uncharacterized protein LOC101505842
STRINGXP_004492501.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-34ERF family protein