PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492484.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 543aa    MW: 62132.2 Da    PI: 4.7017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.24e-291795427374
            GRAS   7 ecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                     +  ea+++g+++la+ +L+ +s+   sp g++++ la+y+ +   +++          l+ ++      ++  a +k++++   + k++h++  +
  XP_004492484.1 179 AHGEALEQGQKQLAEIILKCISQKvTSPLGESLETLAFYLSQHVTKHVDY--------LKGEA-----YKNFEACFKALYQGNLVGKVAHFASIS 260
                     456899*****************989*************76666666555........33222.....4566678899***************** PP

            GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      Ilea+  e  + +H+iDf i++G+QWp Ll+a ++ +    +l++T ++  + +    s+ +   t+++L + A+++g++++ +    k le+l
  XP_004492484.1 261 SILEAAMLEdcDVIHVIDFCIGNGIQWPFLLEAVSKMN---KTLKLTSIKWCDDEsfekSQWNFDDTKRNLYEQAKSCGLKLKVEE---KGLEEL 349
                     ****976554599*********************9965...46999*999766656778888999*****************9887...788888 PP

            GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvveqe..adh.nsesFlerflealeyysalfdsle 272
                      +e  r+++    +E la nl++ l ++   + + ++    +Lk+ k+l  +     ++++ + +   ++ n  +F   f   l +y al++s+e
  XP_004492484.1 350 VFEIKRINKrglkKEFLAFNLMIGLPHMRMVRNKRKN-GLMFLKVAKDLIKNfgikgMITFGDGDafEKLkNCLNFKSFFEGNLVHYKALLESIE 443
                     5554455545699***************977777777.8899999999876533333689999994323468889******************** PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkd 364
                     ++++++  e+++  ++l+    v+ +   +++     e++++  e  +e G++   ls+++ +++  +lr  +s  y++    ++ ++lvl Wk+
  XP_004492484.1 444 SQFSAQFLEARTACEVLFVAPCVSSLDWLKTW-----EEMKSDCEIEDEIGLEGSGLSKNVLMEVGEVLRGSESS-YEIRnegQNVNQLVLEWKG 532
                     ***99995555555555555555555555555.....456666777889************************66.999843445899******* PP

            GRAS 365 rpLvsvSaWr 374
                      +L+ +S W+
  XP_004492484.1 533 TQLLRFSIWK 542
                     *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.752147520IPR005202Transcription factor GRAS
PfamPF035141.4E-26179542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MYQPEILQSP WLFYEDIDSS STFDHHHHQI IHESYGFTNH VDDYDPSYGI IIDDHVDDDG  60
FNTLLTTSEN STSTIFTNDH IQFEFDEQTF QLPSLMDLDP FDSILTPQID DSIFHDHGYQ  120
QESESSFLSQ NFPSDHASWS PSSTISMKSQ FSSNQPSLNL PQQNMEIENH VSLPHLMEAH  180
GEALEQGQKQ LAEIILKCIS QKVTSPLGES LETLAFYLSQ HVTKHVDYLK GEAYKNFEAC  240
FKALYQGNLV GKVAHFASIS SILEAAMLED CDVIHVIDFC IGNGIQWPFL LEAVSKMNKT  300
LKLTSIKWCD DESFEKSQWN FDDTKRNLYE QAKSCGLKLK VEEKGLEELV FEIKRINKRG  360
LKKEFLAFNL MIGLPHMRMV RNKRKNGLMF LKVAKDLIKN FGIKGMITFG DGDAFEKLKN  420
CLNFKSFFEG NLVHYKALLE SIESQFSAQF LEARTACEVL FVAPCVSSLD WLKTWEEMKS  480
DCEIEDEIGL EGSGLSKNVL MEVGEVLRGS ESSYEIRNEG QNVNQLVLEW KGTQLLRFSI  540
WKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492484.10.0scarecrow-like protein 26
TrEMBLA0A1S2XPH20.0A0A1S2XPH2_CICAR; scarecrow-like protein 26
STRINGXP_004492484.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-10GRAS family protein