PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491906.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29111.3 Da    PI: 10.0396
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ +qvtf kRr+g+lKKA+E+SvLCda+va+i+fs++gkl+e+ss
  XP_004491906.1  9 KRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEFSS 59
                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-31289IPR002100Transcription factor, MADS-box
CDDcd002651.12E-38275No hitNo description
PRINTSPR004044.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2683168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.68586177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FFKRRTGLLK KANEISVLCD AQVALIMFST KGKLFEFSSA  60
PSMEDILERY ERQNHTELTG ANTEAQGNWS YEYMKLTAKV QVLERNLRNF VGHDLDPLSV  120
KELQSLEQQL DMSLKRIRTR KNQVMNQSIS ELHKRARALQ DQNSKLAKTK EKEKTVSEHP  180
QRFPETIGIG QCSATFNLTC QPDLLPPQRL VPSLTLSGTL QARGSLEFEE RGEVQIVPSN  240
NTSLIPAWML QHLTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17184183MEF2C
5f28_B2e-17184183MEF2C
5f28_C2e-17184183MEF2C
5f28_D2e-17184183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9741840.0JN974184.1 Pisum sativum MADS-box protein (FULc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491906.10.0truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN69e-83FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S2XN550.0A0A1S2XN55_CICAR; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGXP_004491905.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-77AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]