PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491789.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 320aa    MW: 36240.6 Da    PI: 8.0537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++ + g+ R+ k+c++rw +yl
   XP_004491789.1 14 KGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++  +lG++ W++Ia++++  Rt++++k++w+++l
   XP_004491789.1  67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.733965IPR017930Myb domain
SuperFamilySSF466892.45E-3111108IPR009057Homeodomain-like
SMARTSM007172.8E-151363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001675.48E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129420.3666116IPR017930Myb domain
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002499.3E-1567112IPR001005SANT/Myb domain
CDDcd001677.50E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTKTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
TDNNSEGNFE DEKFSSSSSQ RIPRGQWERR LQTDIQMAKK ALSEALSPQK PISSNFSSSM  180
SSNIKEQPHQ SICYASSADN IARLLKGWMK NPQKSSKSSL TQNSFNNFVV SAGTDTASSG  240
TKCGEYLSET FESLFGFEPL ESFESSNSEF SQSLSPDHAS TILQDESKPD HIANEMPFSL  300
LEKWLLDEAS CPDKNSVRLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7680221e-124FJ768022.1 Glycine max transcription factor MYB392 mRNA, complete cds.
GenBankKT0312041e-124KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491789.10.0myb-related protein 306-like
SwissprotP813921e-112MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S2XQ330.0A0A1S2XQ33_CICAR; myb-related protein 306-like
STRINGXP_004491789.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.15e-98myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]