PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491303.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SRS

Protein Properties

Length: 418aa MW: 44185.7 Da PI: 9.2401

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491303.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.2	3.6e-67	192	354	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrer +++a+++ a s+ +++ +k++r s++++++s+t++s++++ XP_004491303.2 192 GGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLATAATTTVVAGGSSgSTSGAKKPRLIASQQTTTTSHTSTSNTTP 286 5789********************************************99999988887776658899999************** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++t s +P +v+++avf+cvrv+svddg++e+aYq++v+igGhvfkG+Lyd+G+e+ XP_004491303.2 287 PRSFDTGSshqdasfkesMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVEN 354 *99999*****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.6E-61	194	353	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.5E-27	196	238	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-28	305	352	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
INYKKKKKLF VVATTRRLPS DSGAFADWAA TSSSAARTTA APEELSLGFN AGPTAGPSTG 60 PTTGVWSRSS INYGVATPEM GMFVVAPSFH HHHESLLSDP HSLNPATALG VGVIPLLTTS 120 PCHLDNESNM LNNRRQQQGI QFWHEQHHQQ QQQQGSHHHY LKKQSFLDHN TSPTNLIHGG 180 GGLTGSGTSS GGGTTTCQDC GNQAKKDCTN RRCRTCCKSR GFDCPTHVKS TWVPAARRRE 240 RLATAATTTV VAGGSSGSTS GAKKPRLIAS QQTTTTSHTS TSNTTPPRSF DTGSSHQDAS 300 FKESMPGQVR APAVFKCVRV TSVDDGKDEY AYQAVVKIGG HVFKGFLYDH GVENNNNNKE 360 VYPNLSELHL GGGNRNGVSS SSPMMDPSHD VYAAASSAGG GGGGLLGGHG SAYGNQIN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

INYKKKKKLF VVATTRRLPS DSGAFADWAA TSSSAARTTA APEELSLGFN AGPTAGPSTG  60
PTTGVWSRSS INYGVATPEM GMFVVAPSFH HHHESLLSDP HSLNPATALG VGVIPLLTTS  120
PCHLDNESNM LNNRRQQQGI QFWHEQHHQQ QQQQGSHHHY LKKQSFLDHN TSPTNLIHGG  180
GGLTGSGTSS GGGTTTCQDC GNQAKKDCTN RRCRTCCKSR GFDCPTHVKS TWVPAARRRE  240
RLATAATTTV VAGGSSGSTS GAKKPRLIAS QQTTTTSHTS TSNTTPPRSF DTGSSHQDAS  300
FKESMPGQVR APAVFKCVRV TSVDDGKDEY AYQAVVKIGG HVFKGFLYDH GVENNNNNKE  360
VYPNLSELHL GGGNRNGVSS SSPMMDPSHD VYAAASSAGG GGGGLLGGHG SAYGNQIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491303.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR962126	1e-154	CR962126.2 Medicago truncatula chromosome 5 clone mth2-143k7, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491303.3	0.0	protein LATERAL ROOT PRIMORDIUM 1 isoform X1
Swissprot	Q94CK9	4e-83	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S2XN83	0.0	A0A1S2XN83_CICAR; protein LATERAL ROOT PRIMORDIUM 1 isoform X1
STRING	XP_004491303.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-72	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]