PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 427aa MW: 48444.1 Da PI: 6.643 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 47 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_004490782.1 47 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 91 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-17 | 41 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.601 | 42 | 96 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-16 | 45 | 94 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-13 | 46 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 47 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-13 | 47 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-9 | 49 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDSDSMAIQG QEGVHSVVHV QKLIDQFSCG DDYALKVRKP YTITKQRERW TDEEHKKFLE 60 ALKLYGRAWR RIEEHVGTKT AVQIRSHAQK FFSKINRDTD GNTTTLVESI EIPPPRPKRK 120 PIHPYPRKLV EIRKNEISNL EQPLRSNSIV SLDFGQENKS PKSVLSSVAL ETLGFSDSDS 180 PTGSLSPVSS MSAVHTSSFP LLERKLSFEQ DMPPQIDELN DGSAHDEQLL EKPELFSKEH 240 VSTKDEAVDE SPGRTLKLFG TTLLVKDTCK PSSTSMEASN SKQTTTMHLL QQPQSECSDI 300 SHTTVVPWWT ISRNSAFKPL HKEHEEKPLH SNHEECEDKE TQKEGSCVGS NNTSSTNDGE 360 SNEISNDQDK IDHVNYLVGH ITPSETVRHK TFGKGFVPYK RCMAERERQC STVTEERREH 420 QRIRLSL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490782.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141701 | 0.0 | BT141701.1 Medicago truncatula clone JCVI-FLMt-19O16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490782.1 | 0.0 | protein REVEILLE 2 isoform X1 | ||||
TrEMBL | A0A1S2XKM9 | 0.0 | A0A1S2XKM9_CICAR; protein REVEILLE 2 isoform X1 | ||||
STRING | XP_004490782.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 4e-51 | MYB_related family protein |