PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 701aa MW: 79451.4 Da PI: 10.5183 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.8e-16 | 141 | 229 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp +f+eeh k + ++lede+g + + +i ++++ l++GW++F+ ++L++gD +vF+l++ +f ++ XP_004490735.1 141 FVKSMVRSHVYSCFWLGLPSRFCEEHLPK--TVYNMVLEDEDGSETDAVYIGNRSG----LSGGWRGFALHHKLDDGDALVFELVEPARF--KIY 227 89************************534..3457***************555554....9**********************9875555..665 PP EE CS B3 96 vf 97 ++ XP_004490735.1 228 IV 229 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 134 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 135 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-22 | 139 | 230 | No hit | No description |
SMART | SM01019 | 4.1E-21 | 141 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-14 | 141 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 141 | 232 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MAKGCNNYEE ARKLRLEENK KRFEDLGISK ISKKLTKIKS PAKKSPSRFL KPNSKTNGVV 60 EPRRSSRARN SVSSYREEFS MDLPHRSSYI RKRSRSSSSS WESYIARPLE EIKEATREER 120 IRALEAAEKL QNNLQSSNPS FVKSMVRSHV YSCFWLGLPS RFCEEHLPKT VYNMVLEDED 180 GSETDAVYIG NRSGLSGGWR GFALHHKLDD GDALVFELVE PARFKIYIVR AFPKSDEEEE 240 NDTLVEEENV HKSKATKESK GSGNRQSESK KTKRQKQAIV CETKESESSK ESMPESSINK 300 DSKLKRVNPK RRTKSFQKNV QKKSKLPTTP DSESKEEAKV ETLKLETTIR KTRSSQKKMQ 360 KISEVPTTPD SEPKEEAKIE SLKPKAAIAK TRSSQRKMEK MSEVPTTPDS QPKEEAKIES 420 LKPKAAIAKT RSSQRKRQKI SEVPTTPDNE PKEEAKIESL KPKAAIAKTR SSQRKMQKIS 480 EVPTTSDSKP KEEAKIETLK PKAAIAKTRS SQRKRQKISE VPTTPDNEPK EEAKIESLKP 540 KAAIAKTRSS QRKRQKISEV PTTPDNEPKE EAKIETPKPN AAIAKTRSSQ RKMQKTSEVP 600 TTSKGEALVE TMKPKAATKL SKKKKKSEEG NACEIGDSGN TKQLLEDNVV KIIEVNPSEK 660 KEVIEDADIE LKKVERDEKA SKCDSQKPRK KPTQRFFRKR A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 689 | 699 | KKPTQRFFRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490735.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152498 | 2e-36 | AC152498.11 Medicago truncatula chromosome 8 clone mth2-38m20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490734.1 | 0.0 | ankyrin repeat domain-containing protein 12-like | ||||
Refseq | XP_004490735.1 | 0.0 | ankyrin repeat domain-containing protein 12-like | ||||
TrEMBL | A0A1S2XMV7 | 0.0 | A0A1S2XMV7_CICAR; ankyrin repeat domain-containing protein 12-like | ||||
STRING | XP_004490734.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-46 | B3 family protein |