PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004490032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 385aa MW: 40663.6 Da PI: 7.0011 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.7 | 8.4e-42 | 63 | 193 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ XP_004490032.1 63 PPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshyfrae 157 789******************************************************************99988888888888666666677777 PP TCP 89 ...kaaksaakskksqksaasalnlakesrakarar 121 + +++++ ++++++s ++ ln+++ ++a +a+ XP_004490032.1 158 dsrRTNSTNMLENHNPSSLSAILNFNNVQNAILQAK 193 764444444477777777777777777666544444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-41 | 68 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.683 | 69 | 123 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MELEADHHQN NGIRSRPNFP LQLLEKKDII DDISEQPCST TANDGCSAIV TSNNTADQQK 60 KPPPKRASTK DRHTKVDGRG RRIRMPAACA ARVFQLTREL GHKSDGETIE WLLQQAEPAV 120 IAATGTGTIP ANFTSLNISL RSSGSTMSAP SHYFRAEDSR RTNSTNMLEN HNPSSLSAIL 180 NFNNVQNAIL QAKQELREEN AAAGGGGGFE SVASDSDGNI GRKRRSEQEF LSQNMGSYLL 240 QSNVGSLPSS HASNTAAFWM VTGHGNQGVN VGGGGNGNEP IWAIPSVGNS GNLYRGAMSS 300 PNGIHFMNFG SPMSLMPGSQ LGSGIVGVGG GNGGFLAESN LNMLSAMNAY RQINSTNCVS 360 DSSGQHHGGG GSGRDDGHDS TSQHS |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004490032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490032.1 | 0.0 | transcription factor TCP15-like isoform X2 | ||||
TrEMBL | A0A1S2XIX9 | 0.0 | A0A1S2XIX9_CICAR; transcription factor TCP15-like isoform X2 | ||||
STRING | XP_004490031.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 4e-60 | TCP family protein |