PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004490031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 425aa MW: 45031.4 Da PI: 7.1891 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.7 | 6.7e-41 | 63 | 190 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ XP_004490031.1 63 PPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshyfrgn 157 789******************************************************************99987777777777555555556666 PP TCP 89 .......kaaksaakskksqksaasalnlakes 114 ++a++aa + +s+++ + + n++++ XP_004490031.1 158 yfnpssfSSAAAAAAQVRSRAEWERTININNNI 190 666655533333333333333333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-40 | 68 | 239 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.683 | 69 | 123 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 425 aa Download sequence Send to blast |
MELEADHHQN NGIRSRPNFP LQLLEKKDII DDISEQPCST TANDGCSAIV TSNNTADQQK 60 KPPPKRASTK DRHTKVDGRG RRIRMPAACA ARVFQLTREL GHKSDGETIE WLLQQAEPAV 120 IAATGTGTIP ANFTSLNISL RSSGSTMSAP SHYFRGNYFN PSSFSSAAAA AAQVRSRAEW 180 ERTININNNI NMNVVAEDSR RTNSTNMLEN HNPSSLSAIL NFNNVQNAIL QAKQELREEN 240 AAAGGGGGFE SVASDSDGNI GRKRRSEQEF LSQNMGSYLL QSNVGSLPSS HASNTAAFWM 300 VTGHGNQGVN VGGGGNGNEP IWAIPSVGNS GNLYRGAMSS PNGIHFMNFG SPMSLMPGSQ 360 LGSGIVGVGG GNGGFLAESN LNMLSAMNAY RQINSTNCVS DSSGQHHGGG GSGRDDGHDS 420 TSQHS |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004490031.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490031.1 | 0.0 | transcription factor TCP14-like isoform X1 | ||||
TrEMBL | A0A1S2XLE2 | 0.0 | A0A1S2XLE2_CICAR; transcription factor TCP14-like isoform X1 | ||||
STRING | XP_004490031.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 6e-53 | TCP family protein |