PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489951.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 259aa    MW: 28597.6 Da    PI: 6.6094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10142189455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_004489951.1 142 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 189
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.43E-11136193No hitNo description
SuperFamilySSF474596.67E-18136206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.878138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18138206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-8142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-11144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDPAPIINSP SNTASYHLPE IWKFPPARTP HFEHAFGDFA TAPTQEDLGR DPVASEQIPV  60
NHGWKRRDTE EDSVKGVSTS NANGGNSVND DGKRSKTSGN SKGEVIVGEE NSSGKHAEKT  120
TEAHPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKV LQDLVPGCNK VIGKALVLDE  180
IINYIQSLQN QVEFLSMKLE AVNSRLTPGI DVFPPKDFDQ QTYDTTTIPF GSQATRDYSR  240
GSSPEWLHMQ VGSGFGRAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466841e-159BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489951.10.0transcription factor BHLH094-like
SwissprotQ69WS31e-68BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1S2XIQ50.0A0A1S2XIQ5_CICAR; transcription factor BHLH094-like
STRINGXP_004489951.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-90BIG PETAL P