PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489410.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 347aa    MW: 40421.5 Da    PI: 6.318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.3e-55201461129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv ++ + +  +i e+d++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat +gyWkatgkd+e+++ 
  XP_004489410.1  20 LPPGFRFHPTDEELITHYLSQKVLNSCFCA-IAIGEADLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDREIFR- 112
                     79***********************99888.78***************888999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++l+g+kktLvfykgrapkgekt+Wvmheyrle
  XP_004489410.1 113 EKTLIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 146
                     999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6116170IPR003441NAC domain
PROSITE profilePS5100557.53220170IPR003441NAC domain
PfamPF023651.9E-2921145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMDAMEKKSR DLESDEKFEL PPGFRFHPTD EELITHYLSQ KVLNSCFCAI AIGEADLNKC  60
EPWDLPWRAK MGEKEWYFFC VRDRKYPTGL RTNRATCAGY WKATGKDREI FREKTLIGMK  120
KTLVFYKGRA PKGEKTNWVM HEYRLEDKYS LQNTSKRTMK EWSICRVFEK SSCGKKMHIQ  180
DLVRFNSIGK ELPPLMDSSP NNSELKSTIG DSSHVTCFNQ NLIEDSQRIQ NDNIIDSFES  240
PILTSSYSYS SNPYDNNISS ASWTQNLSHQ STQVVNSKSS DCFMVQEQSM LRMLIENHGT  300
STKTKFEKDQ ECDFDVDISS MIYNNEMFQV NQEYSIGHLD NGFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-541717617174NAC domain-containing protein 19
3swm_B1e-541717617174NAC domain-containing protein 19
3swm_C1e-541717617174NAC domain-containing protein 19
3swm_D1e-541717617174NAC domain-containing protein 19
3swp_A1e-541717617174NAC domain-containing protein 19
3swp_B1e-541717617174NAC domain-containing protein 19
3swp_C1e-541717617174NAC domain-containing protein 19
3swp_D1e-541717617174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227244e-92AC122724.36 Medicago truncatula chromosome 6 clone mth2-14m14, complete sequence.
GenBankAC1484854e-92AC148485.10 Medicago truncatula chromosome 6 clone mth2-46j5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489410.10.0NAC domain-containing protein 92
SwissprotQ9FLJ21e-107NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1S3DY500.0A0A1S3DY50_CICAR; NAC domain-containing protein 92
STRINGXP_004489410.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-108NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]