PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004488297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 299aa MW: 34430.9 Da PI: 4.6676 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.6 | 3.4e-13 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 kri+n+ r++tf R+ng+ KK +E S +aev++i++ s+g XP_004488297.1 9 KRIQNEKARKTTFVHRKNGLSKKVSEFSSIFGAEVCLIVYDSDG 52 79**************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-17 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.507 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.99E-17 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.4E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-14 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGRPKTNLKR IQNEKARKTT FVHRKNGLSK KVSEFSSIFG AEVCLIVYDS DGSDIPMTFP 60 ENATTVQSML KKYEHQKIET TLEEFGVKDY YANKKNLVEA QISRVRKEIL KKKYPTSSPI 120 FNNMEEEQLK AFIAFVDSKI EACNHMLKNM QQKDTCFVQN MAQDSDVCLH SSQDNVVMHS 180 LPHMQHITDC MEPTNDEISE WIDFSDLSDL PPVPSTNQLS KLVDWDDMKI ESEEFTSFIQ 240 NTMQNITYDN ILSSHSSQLD VNHNIPQMQN INGCMLSLYD DICDTVDFTD LIDWDNIVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004488297.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004488297.1 | 0.0 | MADS-box protein FLOWERING LOCUS C-like | ||||
TrEMBL | A0A1S2XEX6 | 0.0 | A0A1S2XEX6_CICAR; MADS-box protein FLOWERING LOCUS C-like | ||||
STRING | XP_004488297.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 9e-16 | AGAMOUS-like 82 |