PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487993.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HB-PHD
Protein Properties Length: 718aa    MW: 82227.2 Da    PI: 9.4633
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-10500544953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +e +e L  +F++n  p ++ +e L+k+lg++ ++V+ WF+N R+
  XP_004487993.1 500 HEAVEKLRHVFAENELPPRSVKESLSKELGIDVAKVSKWFKNARY 544
                     68899**************************************97 PP
2PHD41.23.8e-14236291151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+   +  +++++lCdg C+++fH+kCl+++l++e++p g   w+C+ C++k
  XP_004487993.1 236 FCANCKMreAFPDNDIILCDGsCNRAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 291
                     6999*9954455********55********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.57E-14228293IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-12233292IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.665234291IPR019787Zinc finger, PHD-finger
PfamPF006282.0E-11236291IPR019787Zinc finger, PHD-finger
SMARTSM002494.4E-9236289IPR001965Zinc finger, PHD-type
CDDcd155044.64E-31236288No hitNo description
PROSITE patternPS013590237288IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007110.754489549IPR001356Homeobox domain
SMARTSM003894.4E-9491553IPR001356Homeobox domain
CDDcd000864.93E-7492553No hitNo description
SuperFamilySSF466891.8E-9492553IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-11493560IPR009057Homeodomain-like
PfamPF000461.5E-7500544IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MRDTEKLNKR GFAKSNNSKE HIESKVDSFG FKKSSTKKRG KKHKLTSKSQ QLRGYTNASG  60
RTATNSSIKA PSKDPSNKRL IIRQNLHKTD KNSSQVQPSK KIQGGQISYS SYRKGEKDVD  120
QVKNTQKRKR RRKKKRQRHN VDLDDTSRLQ RRTRNLLIRM KLEQNLIDAY SGEGWKGQSR  180
EKIRPEMELQ RAKKQILKCK LSIRDAIRQL DSLSSVGSIE GSVIANDGSV YHEHIFCANC  240
KMREAFPDND IILCDGSCNR AFHQKCLDPP LDTENIPPGD QGWFCKFCEC KIEILEATNA  300
HLGTRFSLDS TWQDVFKEEA AIPDGDTALL NQEEEWPSDD PEDDDYNPER KDDNHGIDTE  360
GNNDNVSDNS SSSSSMWSLN EECSLLDEGI NLEYYSGNGH IDSDESGEIA CGHRQRKAVD  420
YKKLYDEMFG KDATLHEQVS EDEDWGPGKR RRREKESDAV NTLMTLHESK NKRPNNENND  480
RIREDSSGIP IKRPCFRLPH EAVEKLRHVF AENELPPRSV KESLSKELGI DVAKVSKWFK  540
NARYMALKTR KHQEGGEELQ NFTSKTTKDS TSQHVEKDEI LKPKVSKITV IRSVKNSENV  600
ACKEKTKASS SPLKKKRREI PLPLRENGNK DSNEVSDDVS LMKLLKERKK KVSFAFEGDS  660
EAAELEFERL SKVKMKLDRL KQKITQVQNY NSKGSNELYV NEPSIIYVPT AELREKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131QKRKRRR
2126131KRKRRR
3127131RKRRR
4127134RKRRRKKK
5127135RKRRRKKKR
6129135RRRKKKR
7130135RRKKKR
8132137KKKRQR
9449454RRRREK
10613617KKKRR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487993.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235471e-110AC123547.15 Medicago truncatula clone mth2-26n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487993.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-157PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1S2XE920.0A0A1S2XE92_CICAR; pathogenesis-related homeodomain protein
STRINGXP_004487993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-154pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]