PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487762.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 597aa    MW: 68547.6 Da    PI: 5.1802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.46.5e-942165952374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalkl....fse 86 
                      e Ll+cAe v  ++ e+a+++L++++ l+s++g+p++R++ yf+eAL++r+++++ +++ + + s+++ ++      +++ l+        f+e
  XP_004487762.1 216 AESLLACAEKVGYQQYERARSFLSQIESLSSKTGNPVKRVVYYFAEALRRRINKETGRVSVSSNNSTKKIESlfdpeeTTKDLN---PtliaFFE 307
                     578***************************************************877777666666655555555443223333...03347*** PP

            GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg.skeeleetgerLakfAeelgvpfef 178
                       P+ k+s +t+ qa+ e v  ++++H+iD++i +Gl W  L+q+L sR+e  p   l+iT+++s +++ sk  +  tg+rL++fA++l+++f+f
  XP_004487762.1 308 DLPFCKVSMFTCVQALIENVTDAKKIHVIDLEIRKGLPWTILMQELQSRNELCPleILKITAIVSGNTNnSKIIVDDTGKRLSEFAQSLNINFSF 402
                     **************************************************6655559*******988778999********************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     n++++++l  l+ + ++++++E++aV ++++l +  ++s +le     ++++v++++P v+vv+e ea+hns+sF++rf+eal y+sa+fd++e 
  XP_004487762.1 403 NIVMVSDLLHLSEDLFEIDSDETVAVYSHFALRSKIQNSDQLET----IMRVVRTINPVVMVVAEIEANHNSKSFVNRFIEALFYFSAFFDCFED 493
                     ********************************999977777777....*********************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                      + +++++r+ +E ++++  i+n va egaer+ r+ +   Wr+ ++++G+ + +ls     qa+l+ ++++ ++  + + + ++l+ gWk+ p+
  XP_004487762.1 494 CMKKDEKNRMIMESMYFSHGIRNTVAEEGAERKSRNVKIDVWRNFFTRFGMVEKELSMMCLYQAELVAKRYAcGNSCTFDMNGHCLLVGWKGTPI 588
                     ************************************************************************99999999*************** PP

            GRAS 368 vsvSaWr 374
                      s+S+W+
  XP_004487762.1 589 ASASVWK 595
                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.058189574IPR005202Transcription factor GRAS
PfamPF035142.3E-91216595IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDDLYHFDEF NFHALEDKFS SSNDIFWETK GHNEMKNVQF SLPQDLGDYN GTDESLNSNF  60
GFIPNDPSQE QEFLLSTTSQ QKYHQDYEAF DNLHFDMVHF DEQFPTKAVP ICETKNEKQY  120
HQTPVEILKN YGKGFKRLLH DEGKILHPID DFDLVTKNEH VRKKLSTEDI MKIAGTRFIQ  180
SSSSESSSSG KLILNHPFGF SFSGLSDEEK EDVALAESLL ACAEKVGYQQ YERARSFLSQ  240
IESLSSKTGN PVKRVVYYFA EALRRRINKE TGRVSVSSNN STKKIESLFD PEETTKDLNP  300
TLIAFFEDLP FCKVSMFTCV QALIENVTDA KKIHVIDLEI RKGLPWTILM QELQSRNELC  360
PLEILKITAI VSGNTNNSKI IVDDTGKRLS EFAQSLNINF SFNIVMVSDL LHLSEDLFEI  420
DSDETVAVYS HFALRSKIQN SDQLETIMRV VRTINPVVMV VAEIEANHNS KSFVNRFIEA  480
LFYFSAFFDC FEDCMKKDEK NRMIMESMYF SHGIRNTVAE EGAERKSRNV KIDVWRNFFT  540
RFGMVEKELS MMCLYQAELV AKRYACGNSC TFDMNGHCLL VGWKGTPIAS ASVWKFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-412175956375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487762.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487762.10.0DELLA protein RGL2-like
TrEMBLA0A1S2XDS30.0A0A1S2XDS3_CICAR; DELLA protein RGL2-like
STRINGXP_004487762.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-60RGA-like 2