PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487384.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 306aa    MW: 34963.3 Da    PI: 9.5346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-071722121055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+++ ++   L++l+P++     kK++ a+ Le+A +Y+k Lq
  XP_004487384.1 172 RQRRQKLSEKTRCLQKLMPWD-----KKMDQATLLEEAYKYVKFLQ 212
                     9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.506162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-5168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-6170214No hitNo description
Gene3DG3DSA:4.10.280.105.5E-9171219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10172225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5172212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPNMNSMFS NETTTSSSID PMFSTFSLQS LLTFNPSFFT DATFHTLTDY PPLPNLPQST  60
TDQTPNLNNN NNNNKKHLLV IPKTEHPMNI NHLPSIEQLL PLQQNQQQPF HFFPNNYYQP  120
FQSFHSLPQL RSPEPTFSDT KRPRLNLTPE TTPPPSSVRG KSPLIPQSNL ARQRRQKLSE  180
KTRCLQKLMP WDKKMDQATL LEEAYKYVKF LQAQFSVLQS MPSHTTNNYG SGAGAGGGGV  240
FADLEKLNRN QVLQVLVNSP VAQTKLYSQG HCVFSMEQFS LLRKLSENRQ QQQNMSEHDS  300
SRTFFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487384.10.0transcription factor bHLH117
TrEMBLA0A1S2XCX40.0A0A1S2XCX4_CICAR; transcription factor bHLH117
STRINGXP_004487384.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.16e-26bHLH family protein