PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20702.4 Da PI: 9.6929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 65 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r kr +lg+f ta +Aa a+++a+++++g XP_004487359.1 65 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFLTAIGAALAYDEAARAMYG 115 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-12 | 65 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.09E-31 | 65 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 66 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-36 | 66 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.298 | 66 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-20 | 66 | 123 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.7E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MIVKACDKGE VEGSKSVGKI LARWKKYNAQ LDSCNDADKP VRKVPAKGSK KGCMKGKGGP 60 ENSRCNYRGV RQRTWGKWVA EIREPNRGKR LWLGTFLTAI GAALAYDEAA RAMYGSCARL 120 NFPNVSVPRF SEESSNDSPA ANHSNSSMTG SANSESMIMP NNLGIGAKDG NDMEPISLTL 180 SVKQENEEGV N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-18 | 66 | 123 | 5 | 63 | ATERF1 |
3gcc_A | 6e-18 | 66 | 123 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487359.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487357.1 | 1e-139 | putative dehydration-responsive element-binding protein 2H | ||||
Refseq | XP_004487359.1 | 1e-139 | putative dehydration-responsive element-binding protein 2H | ||||
Refseq | XP_027188126.1 | 1e-139 | putative dehydration-responsive element-binding protein 2H | ||||
Refseq | XP_027188127.1 | 1e-139 | putative dehydration-responsive element-binding protein 2H | ||||
Swissprot | Q8LFR2 | 4e-47 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q9SIZ0 | 2e-47 | DRE2H_ARATH; Putative dehydration-responsive element-binding protein 2H | ||||
TrEMBL | A0A1S2XCT1 | 1e-138 | A0A1S2XCT1_CICAR; putative dehydration-responsive element-binding protein 2H | ||||
STRING | XP_004487356.1 | 1e-139 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 3e-39 | ERF family protein |
Publications ? help Back to Top | |||
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