PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487140.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 304aa MW: 33722 Da PI: 7.3122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.9	1.5e-40	36	97	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss XP_004487140.1 36 PEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	24	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-34	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDSSSGQTQQ MSSNSSLENM LGCSKEEQDT KAKPQPEQAL KCPRCDSTNT KFCYYNNYSL 60 TQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSTSK RVQDQSFTPN LINPFNNFPH 120 SSYDHNSNDF TLALARLQKQ SCGQMGHFDD NDVSILGNPN SATSSFNDVI GNHSTTNNGL 180 FDAIRSGLFL GSGIQYNYNN NNVQNLYGVY GNGDNMEVNS GNNNSNVCGV GEEMMFPYEQ 240 EIRGAINVKQ ELCSGREQSE SKVFGGFPWQ LNGGPNMGEI ESVRGNWNNG FTSNWQGVLH 300 SPLM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138411	1e-132	BT138411.1 Medicago truncatula clone JCVI-FLMt-14J10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487140.1	0.0	dof zinc finger protein DOF2.1 isoform X1
TrEMBL	A0A1S2XFE2	0.0	A0A1S2XFE2_CICAR; dof zinc finger protein DOF2.1 isoform X1
STRING	XP_004487140.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	4e-37	Dof family protein