PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486946.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 416aa MW: 46660.2 Da PI: 5.8643

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	350	395	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ k + a++L +Av+YIk+Lq XP_004486946.1 350 SIAERVRRTKISERMRKLQDLVPNM----EKQTNTADMLDLAVDYIKDLQ 395 689*******************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.205	344	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-16	347	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-12	348	399	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-15	349	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-14	350	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	350	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDSSDLQQQQ VNSSSGLTRY RSAPSSYFNN IIDREFYEHV FNRPSSPETE RVFSRFMNSL 60 GSEEDLLAQK ISVDSTVKEE EEQQQQVVQQ QSNININNIN INDDDNNSNN YNNSAATTSH 120 GFYQSSVMPP LPNQNLSSGM EGNYSMGVNR LQQMKSHGGN NSNLIRHSSS PAGLFSQINI 180 ENGYVIMRDM GNLGAVNNSV KEAKFSTTRS LKNSSNYSSR PMSSIAEIGD KGNRENNQEN 240 DVFGENRGND YISEYQVDTW DDTEMMSENV GGLKRFRDND SKQQFSGLNA SSSVQNETGG 300 GHSSSSPLAH QLSMPNTLSE MAAMEKFLHF SDSVPMKIRA KRGCATHPRS IAERVRRTKI 360 SERMRKLQDL VPNMEKQTNT ADMLDLAVDY IKDLQNQVQT LSDCRAKCTC SHKQQQ

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDSSDLQQQQ VNSSSGLTRY RSAPSSYFNN IIDREFYEHV FNRPSSPETE RVFSRFMNSL  60
GSEEDLLAQK ISVDSTVKEE EEQQQQVVQQ QSNININNIN INDDDNNSNN YNNSAATTSH  120
GFYQSSVMPP LPNQNLSSGM EGNYSMGVNR LQQMKSHGGN NSNLIRHSSS PAGLFSQINI  180
ENGYVIMRDM GNLGAVNNSV KEAKFSTTRS LKNSSNYSSR PMSSIAEIGD KGNRENNQEN  240
DVFGENRGND YISEYQVDTW DDTEMMSENV GGLKRFRDND SKQQFSGLNA SSSVQNETGG  300
GHSSSSPLAH QLSMPNTLSE MAAMEKFLHF SDSVPMKIRA KRGCATHPRS IAERVRRTKI  360
SERMRKLQDL VPNMEKQTNT ADMLDLAVDY IKDLQNQVQT LSDCRAKCTC SHKQQQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486946.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486946.1	0.0	transcription factor bHLH130-like isoform X1
TrEMBL	A0A1S2XBV1	0.0	A0A1S2XBV1_CICAR; transcription factor bHLH130-like isoform X1
STRING	XP_004486946.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	5e-67	bHLH family protein