PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 329aa MW: 35879 Da PI: 6.4497 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.7e-34 | 49 | 103 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_004486394.1 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 46 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-32 | 48 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.42E-18 | 48 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-25 | 49 | 104 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 51 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-23 | 136 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MYHPSNDPNS SLIGSNSLVH GQHIDCGRSA MDPGNGGSNL ANNSNLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDEGKKADK 120 KEAGDMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ 180 QRLSGVLSEA PGSGIAAPTP GDMCQELDNK SDPATPDPEK AAKEHAPAKS LSVESFSSHH 240 EPTTPDSGCQ LVSPADSPEG ERSSKKQRVS VEGTYSKQDM VLPHQILESS MSSYQQQTTI 300 FLTQDHFDPS LGISSGSGEE MDKLGGRNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486394.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143618 | 0.0 | BT143618.1 Medicago truncatula clone JCVI-FLMt-6M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486394.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_004486395.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_012569914.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-120 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1S3E3G6 | 0.0 | A0A1S3E3G6_CICAR; myb family transcription factor PHL7 | ||||
STRING | XP_004486394.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8610 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-97 | G2-like family protein |