PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 461aa MW: 51229.8 Da PI: 7.6569 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.6 | 1.3e-35 | 75 | 208 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +i el+++ +s s+s+c++ XP_004486008.1 75 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDSISELPSLnintfpqtptherqnnnnnlNSLSKSACSST 169 689*************************************************************8887776666555544444433333444333 PP TCP 77 sssssasnsssgkaaksaakskksqksaasalnlakesr 115 s+ s++s+ ++k ++s+ ++++q+++++ +++++++ XP_004486008.1 170 SETSKGSERAKEKDNESSFAQQQQQQQHHHDVSVNHNHH 208 333333322222222222233333333333344444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.6E-37 | 76 | 201 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.151 | 77 | 135 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MEDEIEAQAC KFPRLGNGSS NNKNIGKYPL DDEEQELIIR RKNVREIGRI DDVNVNTRNH 60 FQNHSSRIVR VSKASGGKDR HSKVMTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA 120 VEWLINAASD SISELPSLNI NTFPQTPTHE RQNNNNNLNS LSKSACSSTS ETSKGSERAK 180 EKDNESSFAQ QQQQQQHHHD VSVNHNHHIS QTASFTELLT GGIGSSNVRI PTTTSPNGSV 240 HDSQINNHGD EFNKTRHHQQ WSSTVTPIMD YFNSGLMVSN SRTHHHNQSS TSSSSSSGCF 300 QLGQQHSLPV SPFSNSGENN SDIQMQQHFP FMSEHLMQQQ AVVTSSSSSH QASGNNDHHY 360 NLNFAISSSG LVGYNRGTLQ SNSQSLLHQL QRFSPMDGSS TTSSSNNLPF FMGATVTPAV 420 PSTMDNNHQH LPFSPVFDAR LQLCYTDGSR HSDQKGKCNK N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-23 | 82 | 136 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-23 | 82 | 136 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00639 | PBM | Transfer from Lj6g3v1946420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486003.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_004486006.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_004486007.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_004486008.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_012568798.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_012568800.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027186410.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027186411.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027186413.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027186414.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027186416.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027186427.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | A0A1S2XA17 | 0.0 | A0A1S2XA17_CICAR; transcription factor TCP2 | ||||
STRING | XP_004485999.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 2e-42 | TCP family protein |