PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485934.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 382aa    MW: 43715.6 Da    PI: 4.42
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sws +++sf+v+++ +fak++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F kg+ +l+++
  XP_004485934.1  14 FLSKTYEMVDDPSTDTIVSWSVTNRSFIVWNQPDFAKDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFVKGQPHLMKN 99 
                     9********************999****************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_004485934.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-38598IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEGHSSSNS MPPFLSKTYE MVDDPSTDTI VSWSVTNRSF IVWNQPDFAK DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANDDFV KGQPHLMKNI HRRKPVHSHS LQNVHGQGAA  120
APPLTESERR NLKGEIQILK HDKQQLLLEF QRQEQEQNIN EIDLLCLKDR LENLEQKQQN  180
MLSSVSQVLQ KPGVELSLYP LTENTERKRR YPRNSSFSDE ASIEDPIEIS QMLCGENADS  240
TSVLSLSMER LDLLDSSIMY WENIMLDLGE ASFQSHSNID FDDSINCADS PDISCVQLDF  300
EVLPKSPMID VNPEPAVAVV PYPVASEEQP AATAPVTTGV NDVFWEQFLT ENPGSNETSG  360
KNNEGKPGEQ DQFWWDYRNI IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26410319129Heat shock factor protein 1
5d5v_B2e-26410319129Heat shock factor protein 1
5d5v_D2e-26410319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485934.10.0heat stress transcription factor A-4a
SwissprotO494031e-106HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1S2X9Y70.0A0A1S2X9Y7_CICAR; heat stress transcription factor A-4a
STRINGXP_004485934.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-99heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]