PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485812.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 173aa    MW: 18758.2 Da    PI: 10.0997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-201565256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  XP_004485812.1 15 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 65
                    69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-131564IPR001471AP2/ERF domain
SMARTSM003803.5E-351578IPR001471AP2/ERF domain
CDDcd000182.53E-291574No hitNo description
Gene3DG3DSA:3.30.730.108.9E-321572IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-221572IPR016177DNA-binding domain
PROSITE profilePS5103222.7211572IPR001471AP2/ERF domain
PRINTSPR003675.0E-111627IPR001471AP2/ERF domain
PRINTSPR003675.0E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDSSSSSSSA NREGHYRGVR KRPWGRYAAE IRDPWKKTRV WLGTFDTPEE AALAYDGAAR  60
SLRGAKAKTN FPPAPVAAGL CLDLNAPSSD HRWPPVPSRS FVVTEFLQTG VLKDFNTPQP  120
PPVAAVAGLR RHDGAFSVSG GVQVAEHTST ASYLGLVRRG IPIDLNEPPP LWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-211572260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-211572563ATERF1
3gcc_A2e-211572563ATERF1
5wx9_A8e-21172172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485812.11e-124ethylene-responsive transcription factor 12
SwissprotQ94ID62e-42ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A1S2XBS91e-122A0A1S2XBS9_CICAR; ethylene-responsive transcription factor 12
STRINGXP_004485812.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-44ERF domain protein 12