PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 926aa MW: 105629 Da PI: 3.9582 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 480 | 499 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC+ffa+ G+C +G++C+F H XP_004485809.1 480 LCDFFAK-GWCIRGSSCSFLH 499 8******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.333 | 475 | 502 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0096 | 475 | 501 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.26E-6 | 475 | 499 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-6 | 480 | 499 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MSISDSPVAD DPSLQDDEDD DEEEEEEEEE EIEEEVEEEE EHEEEQEEEE EIEEQQQQQE 60 EEEEEEVEEV EEEEEEEEEE EEEEEEEEVE EEEEEVVEEE EEEVVEEEEE EEEEEEEKEE 120 EVEEVEEEEE VEEVEEEEEE EVDEEKGEEV EEEEVETIEV EEEEEEEEVE EEEVETVEVE 180 EEEEEEEVEE EEAETVEVEE EEEEEEEEEQ EEETIGMEKE EKEEIAMEEE EEKEEEAIKV 240 KEEEEQEEAE AIKIKKEEEQ EAVVEEKEVV PDSLLDADIL NKDLSQHMEF KVKEENMGPV 300 SSVAENPVVM KSSHYMEEND AVFKASVPSH EAITLKKEEF HLKQEISSPP KSSANLISAE 360 DGKNQGLNVD LDNARSPVQR KTFGGGSEPD CNSKASLSDV KDIDSRATKS SSDMGKDVVT 420 GVIQRDNFVE DADGGPNSKK KIMQSEIESI VDVKQTTSRR TRDLSPSADI KDGNKRPAIL 480 CDFFAKGWCI RGSSCSFLHI KDSVNNSDQE AEGDSFTALQ KRELKLEKGV KERLDGLRTN 540 EEEASPSWHP SHEKEKFLMR DSLFPESRSA FNASNNYFTS NHSSYSSRAE GMTANRNQHM 600 YRGFSNALCS QKLLNSEKEY HALKSTFSSE REDLPLVGSS RVPPHSNGYK LKTCSNNWEP 660 SVPFRPSFFI TSMNVSSPGD LYDPLRDSIE IPNIGDGSLK ASLLIRGSSI QASSQARTCD 720 DSAAVGKHMS DLNDDKSSVS SHNKFYENEP NRSSVPRGKD CLSTKTEITS GTCSNYQNGY 780 VDVGQHTFSV EDTMETEKKR TEHDARHHGE GSGHKKRRVS KDNKIYEMDV DFQTDGSVQK 840 ETKAVKIFRA ALVDLVKELL KPFWHEGRLS KDAHIVIVKK SVDKVVSTLE AHQIPTTEDT 900 AKQYVSSCRS KIAKLVNGYV SKYGKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 797 | 817 | KKRTEHDARHHGEGSGHKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485809.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485809.1 | 0.0 | pinin isoform X2 | ||||
TrEMBL | A0A1S2XCG2 | 0.0 | A0A1S2XCG2_CICAR; pinin isoform X2 | ||||
STRING | XP_004485808.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-32 | C3H family protein |