PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004485808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 932aa MW: 106359 Da PI: 3.9611 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 486 | 505 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC+ffa+ G+C +G++C+F H XP_004485808.1 486 LCDFFAK-GWCIRGSSCSFLH 505 8******.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0096 | 481 | 507 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.26E-6 | 481 | 505 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 481 | 508 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-6 | 486 | 505 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 932 aa Download sequence Send to blast |
MSISDSPVAD DPSLQDDEDD DEEEEEEEEE EIEEEVEEEE EHEEEQEEEE EIEEQQQQQE 60 EEEEEEVEEV EEEEEEEEEE EEEEEEEEVE EEEEEVVEEE EEEVVEEEEE EEEEEEEKEE 120 EVEEVEEEEE VEEVEEEEEE EVDEEKGEEV EEEEVETIEV EEEEEEEEVE EEEVETVEVE 180 EEEEEEEVEE EEAETVEVEE EEEEEEEEEQ EEETIGMEKE EKEEIAMEEE EEKEEEAIKV 240 KEEEEQEEAE AIKIKKEEEQ EAVVEEKEVV PDSLLDADIL NKDLSQHMEF KVKEENMGPV 300 SSVAENPVVM KSSHYMEEND AVFKASVPSH EAITLKKEEF HLKQEISSPP KSSANLISAE 360 DGKNQGLNVD LDNARSPVQR KTFGGGSEPD CNSKASLSDV KDIDSRATKS SSDMGKDVVT 420 GVIQRDNFVE DADGGPNSKK KIMQSEIESI VDVKQTTSRF GHDSWRTRDL SPSADIKDGN 480 KRPAILCDFF AKGWCIRGSS CSFLHIKDSV NNSDQEAEGD SFTALQKREL KLEKGVKERL 540 DGLRTNEEEA SPSWHPSHEK EKFLMRDSLF PESRSAFNAS NNYFTSNHSS YSSRAEGMTA 600 NRNQHMYRGF SNALCSQKLL NSEKEYHALK STFSSEREDL PLVGSSRVPP HSNGYKLKTC 660 SNNWEPSVPF RPSFFITSMN VSSPGDLYDP LRDSIEIPNI GDGSLKASLL IRGSSIQASS 720 QARTCDDSAA VGKHMSDLND DKSSVSSHNK FYENEPNRSS VPRGKDCLST KTEITSGTCS 780 NYQNGYVDVG QHTFSVEDTM ETEKKRTEHD ARHHGEGSGH KKRRVSKDNK IYEMDVDFQT 840 DGSVQKETKA VKIFRAALVD LVKELLKPFW HEGRLSKDAH IVIVKKSVDK VVSTLEAHQI 900 PTTEDTAKQY VSSCRSKIAK LVNGYVSKYG KS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 803 | 823 | KKRTEHDARHHGEGSGHKKRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004485808.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485808.1 | 0.0 | pinin isoform X1 | ||||
TrEMBL | A0A1S2X9S8 | 0.0 | A0A1S2X9S8_CICAR; pinin isoform X1 | ||||
STRING | XP_004485808.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-32 | C3H family protein |