PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004485466.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 520aa MW: 54763.2 Da PI: 7.0829

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004485466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132	5.6e-41	116	240	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ XP_004485466.1 116 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphs 210 5699****************************************************************999888888888886666666666777 PP TCP 89 .............kaaksaa.kskksqksaasalnlakesr 115 +aa ++a l ++++++ XP_004485466.1 211 fhgalaltrhpyeEAAYQHApL-----------LGFHQHHQ 240 7776555555554222222212...........22222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-39	120	245	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	121	175	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MELSDLQNNK QKRGTHQQQQ QESSSSPSNS HSHSHSHSHQ QHLVVPFDGR PPPFIMGSIS 60 IQQPSSNSSS SSSSNSSSSA IDASLAIATR SEPPLLNNTN NQLSSSSPAV TTVANPPKRS 120 TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT 180 IPANFSTLNV SLRSSGSTLS APPSKSAPHS FHGALALTRH PYEEAAYQHA PLLGFHQHHQ 240 QLMSADQIGE ALNPNENYMR KRYREDLFKD DNNNNESGGD GSSSSPKAFK TNHQQQDTMG 300 EGEGGGGGGG GGGSGASSSS SSNSSISGLL RPSNMIPATA MWATAGSGNT IWMVPVSGGG 360 GGAATSNSET QTQNMWPFGP SPSQNSQTQG NNAGTPSPLH FMPRFNLPVS GGGGGGGVEF 420 QGGRGGLQLG SVYQPSQHIG LAVSDSNLGM LAALNAYTRA AAGATDFNVN VNSDNHHHHH 480 HQHQHQHHSI SLDSQSHSHS HSHSHPQPTE SEEDAPDTSQ

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MELSDLQNNK QKRGTHQQQQ QESSSSPSNS HSHSHSHSHQ QHLVVPFDGR PPPFIMGSIS  60
IQQPSSNSSS SSSSNSSSSA IDASLAIATR SEPPLLNNTN NQLSSSSPAV TTVANPPKRS  120
TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT  180
IPANFSTLNV SLRSSGSTLS APPSKSAPHS FHGALALTRH PYEEAAYQHA PLLGFHQHHQ  240
QLMSADQIGE ALNPNENYMR KRYREDLFKD DNNNNESGGD GSSSSPKAFK TNHQQQDTMG  300
EGEGGGGGGG GGGSGASSSS SSNSSISGLL RPSNMIPATA MWATAGSGNT IWMVPVSGGG  360
GGAATSNSET QTQNMWPFGP SPSQNSQTQG NNAGTPSPLH FMPRFNLPVS GGGGGGGVEF  420
QGGRGGLQLG SVYQPSQHIG LAVSDSNLGM LAALNAYTRA AAGATDFNVN VNSDNHHHHH  480
HQHQHQHHSI SLDSQSHSHS HSHSHPQPTE SEEDAPDTSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004485466.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485466.1	0.0	transcription factor TCP8
TrEMBL	A0A1S2X9A3	0.0	A0A1S2X9A3_CICAR; transcription factor TCP8
STRING	XP_004485466.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-62	TCP family protein