PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g22390
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 450aa    MW: 50481.1 Da    PI: 5.3761
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g22390genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.37.5e-22126223185
    trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt++ v++Li+++  ++++ + +             +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d++
  CA12g22390 126 KWTDNVVRLLIQVVACVGDDGSLEGpevglkrksgciQKKGKWKTVSRLMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPSLMDSM 223
                 7**************7777777432245555666779**********************************************669999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-18124250No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNSSGMGGGF LSGYNGGFLG MNRLQQPQSI SNNAVHGHQT NHSNVQLSVS ANLGLEHDKP  60
IGLMDVKGCM AFGKDKAAGP SNVVNTGNNP NNNTSDEDEP SFTEDGNGDN NCGALGKKAS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG PEVGLKRKSG CIQKKGKWKT VSRLMMSNGC  180
HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPSLM DSMPQLSDKA KDTVKKILNS  240
KHLFYREMCA YHNGQKIPDC NDLEFPVHSS PVASQCAKDH TGSQGHEAEE NDESDDDDEE  300
SDDEEDNHGN GDAHRRVEED GSFQPQTSGN DNFLSEINEF FQDPTKSKWE QRMWIKKRML  360
QLEEEKIGIQ AEAFELEKRQ FKWQRFCQKK DRELEIERLE NERLMLENEH MKLQLKHKEH  420
EIVSAKPNIS FNSAPLCLDR PQGRDQIDAA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551237.10.0PREDICTED: uncharacterized protein LOC107850916
RefseqXP_016551238.10.0PREDICTED: uncharacterized protein LOC107850916
TrEMBLA0A1U8EVK80.0A0A1U8EVK8_CAPAN; Uncharacterized protein
TrEMBLA0A1U8EVQ30.0A0A1U8EVQ3_CAPAN; uncharacterized protein LOC107850916
STRINGXP_009768464.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.19e-62sequence-specific DNA binding transcription factors