PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g21180

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 518aa MW: 58874 Da PI: 5.3123

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g21180	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	286.4	8.3e-88	127	503	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppset.seknsseelaalklfsevsPilkfshlt 97 lve Ll+ Ae v+++ + +a +lL++ ++l+s++g+p++Rl+ yf AL++r+ r +++e k++ + + +n + ++a ++ ++ Pi ++ ++ CA12g21180 127 LVERLLASAEKVEEKLFDRAINLLNECEKLSSKSGNPVERLVYYFSGALRERVDReTGKESTKSVGLHDMqDLQNALRGINACTIAVQDMPICQVVKFA 225 5789*************************************************777888888855444044568999999999********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 qaI+e + ++++vHiiD++i++G+QW L+qaL++ + l+iT++ s +s++++eetg+rL +fAe++++ + f+++ +++++dl+ e CA12g21180 226 GIQAIVENIGNAKKVHIIDLEIKMGVQWTILMQALTTHHknsqNHLEYLKITALLSGVDQSRTNVEETGKRLMSFAESFHIALCFKIVEVEDVADLKRE 324 ********************************8774333334579***9999*********************************** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +L+++p+E++aV +++ + +ll ++ +l+s ++ ++ +l+P++++v+e ea++ns+ F++rf+eal y+ a+fd +e + +++++r+ +E e++ CA12g21180 325 DLDIDPDEVIAVYSQYFMSNLLTQQEKLDS----LIGFIGGLNPRIMIVAEVEANLNSPVFANRFIEALFYHGAFFDLFEDCMKNDESTRMAMESEVMW 419 ******************66666666....************************************************************* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n++a eg+err rh + + Wre ++++G+ ++++s++ qak ++ k++ ++ ++++ +++ l +gWk+ pL s+SaW+ CA12g21180 420 HGIRNIIAVEGEERRIRHVSIQLWREYFKRFGMVEIRISNSSLYQAKVVVDKFSgGNSFTLQMNENYLAIGWKGIPLNSLSAWK 503 **************************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.654	101	482	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-85	127	503	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MQEQNEQDFV TLDDWDFDVE EETTNVVYVK ETIDDNKKAR SSSIPSLNIL KDFGNGFRKL 60 KGQKINVHTS ESAYAPRVCK LSTDEILRLG GQKFIQSTES SVSGLDHPFG GALFSLRDED 120 YSRSVELVER LLASAEKVEE KLFDRAINLL NECEKLSSKS GNPVERLVYY FSGALRERVD 180 RETGKESTKS VGLHDMQDLQ NALRGINACT IAVQDMPICQ VVKFAGIQAI VENIGNAKKV 240 HIIDLEIKMG VQWTILMQAL TTHHKNSQNH LEYLKITALL SGVDQSRTNV EETGKRLMSF 300 AESFHIALCF KIVEVEDVAD LKREDLDIDP DEVIAVYSQY FMSNLLTQQE KLDSLIGFIG 360 GLNPRIMIVA EVEANLNSPV FANRFIEALF YHGAFFDLFE DCMKNDESTR MAMESEVMWH 420 GIRNIIAVEG EERRIRHVSI QLWREYFKRF GMVEIRISNS SLYQAKVVVD KFSGGNSFTL 480 QMNENYLAIG WKGIPLNSLS AWKFRKRNPF HGVYLTL*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MQEQNEQDFV TLDDWDFDVE EETTNVVYVK ETIDDNKKAR SSSIPSLNIL KDFGNGFRKL  60
KGQKINVHTS ESAYAPRVCK LSTDEILRLG GQKFIQSTES SVSGLDHPFG GALFSLRDED  120
YSRSVELVER LLASAEKVEE KLFDRAINLL NECEKLSSKS GNPVERLVYY FSGALRERVD  180
RETGKESTKS VGLHDMQDLQ NALRGINACT IAVQDMPICQ VVKFAGIQAI VENIGNAKKV  240
HIIDLEIKMG VQWTILMQAL TTHHKNSQNH LEYLKITALL SGVDQSRTNV EETGKRLMSF  300
AESFHIALCF KIVEVEDVAD LKREDLDIDP DEVIAVYSQY FMSNLLTQQE KLDSLIGFIG  360
GLNPRIMIVA EVEANLNSPV FANRFIEALF YHGAFFDLFE DCMKNDESTR MAMESEVMWH  420
GIRNIIAVEG EERRIRHVSI QLWREYFKRF GMVEIRISNS SLYQAKVVVD KFSGGNSFTL  480
QMNENYLAIG WKGIPLNSLS AWKFRKRNPF HGVYLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-36	150	503	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549031.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A2G2YB37	0.0	A0A2G2YB37_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400011954	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-51	RGA-like 1