PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g20650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | RAV | ||||||||
Protein Properties | Length: 312aa MW: 36600.5 Da PI: 8.014 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.4 | 4.6e-10 | 4 | 52 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV ++g W A+I+ + +r++lg+f t+ eAa a++ a+ + g CA12g20650 4 SRFKGVV-GQNNGHWGAQIYT------NhQRIWLGTFKTETEAAMAYDSAAIRVLG 52 6899996.6679******988......44**********99**********99776 PP | |||||||
2 | B3 | 94.6 | 6.6e-30 | 133 | 216 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ + ++ +++++d+s +sW+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l CA12g20650 133 FQKELTPSDVGKLNRLVIPKKYAMKYfpQ---IQDEEMIFYDTSRKSWKFRYCYWKSSQSFVFTKGWNKFVKDKGLRAKDTLVFNLC 216 99************************633...35668***********************************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.50E-18 | 4 | 52 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-12 | 4 | 54 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-5 | 5 | 53 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-15 | 5 | 55 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.961 | 5 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-14 | 5 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-33 | 130 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-28 | 131 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.71E-29 | 132 | 215 | No hit | No description |
Pfam | PF02362 | 7.6E-27 | 133 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.269 | 133 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-23 | 133 | 237 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKGSRFKGVV GQNNGHWGAQ IYTNHQRIWL GTFKTETEAA MAYDSAAIRV LGHEHEHEHA 60 HRNLAWTNST IQEQDFQTQF STEDILRMIK EGSYTSKFDE YLKEKFVHHF QSLKTLPTMA 120 EGNGAEFSYK QLFQKELTPS DVGKLNRLVI PKKYAMKYFP QIQDEEMIFY DTSRKSWKFR 180 YCYWKSSQSF VFTKGWNKFV KDKGLRAKDT LVFNLCEFKN VTKENCNAFV IDVVKCIEVL 240 PMDLTLNHQQ EQGQVEESIG DNEVKKKEFM RAQTFDDHDV NDALEPIWLF GKQIGWRETK 300 MAMEFNKYSP R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-26 | 132 | 214 | 13 | 101 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-123 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549042.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 5e-80 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A1U8EP90 | 0.0 | A0A1U8EP90_CAPAN; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
STRING | Solyc03g083110.1.1 | 1e-175 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 2e-82 | RAV family protein |