PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g13470

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 334aa MW: 38226.1 Da PI: 7.5302

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g13470	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.6e-54	20	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL kkv + ++++ +i evd++kvePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ +++l CA12g13470 20 LPPGFRFHPTDEELITHYLSKKVVDINFSA-IAIGEVDMNKVEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR-GKSL 116 79***********************999.88***********98999**************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrap+gekt+Wv heyrle CA12g13470 117 VGMKKTLVFYKGRAPRGEKTNWVTHEYRLE 146 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-61	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.144	20	170	IPR003441	NAC domain
Pfam	PF02365	8.8E-28	21	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MMENFSGVVK EDDQQQQMEL PPGFRFHPTD EELITHYLSK KVVDINFSAI AIGEVDMNKV 60 EPWELPWKAK IGEKEWYFFC VRDKKYPTGL RTNRATAAGY WKATGKDKEI FRGKSLVGMK 120 KTLVFYKGRA PRGEKTNWVT HEYRLEGRLS LHNLAKTVKN DWVICRVFQK TTGGKKIHIS 180 GLMRGSCDEN EADNSFLPPL TDSSSNHVHC FSNFLTAQQK NQDNNNMINS FNTCPNFPVL 240 SNSIDIFPRN SLPNAFSWNQ TVPLQHNFPQ PGSFPLQDPA TLRNLLENYG QNMQQSFKKE 300 TDIISVSQET GISTDMNTEI TSTQQDLDCF WNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-57	9	176	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-57	9	176	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-57	9	176	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-57	9	176	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-57	9	176	9	174	NAC domain-containing protein 19
3swm_B	6e-57	9	176	9	174	NAC domain-containing protein 19
3swm_C	6e-57	9	176	9	174	NAC domain-containing protein 19
3swm_D	6e-57	9	176	9	174	NAC domain-containing protein 19
3swp_A	6e-57	9	176	9	174	NAC domain-containing protein 19
3swp_B	6e-57	9	176	9	174	NAC domain-containing protein 19
3swp_C	6e-57	9	176	9	174	NAC domain-containing protein 19
3swp_D	6e-57	9	176	9	174	NAC domain-containing protein 19
4dul_A	5e-57	9	176	6	171	NAC domain-containing protein 19
4dul_B	5e-57	9	176	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-106	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563252.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-126	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8FVR0	0.0	A0A1U8FVR0_CAPAN; NAC domain-containing protein
TrEMBL	A0A2G2Y8Q4	0.0	A0A2G2Y8Q4_CAPAN; NAC domain-containing protein 100
STRING	PGSC0003DMT400050262	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-129	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]