PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g08480
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 488aa    MW: 55587.6 Da    PI: 5.1055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g08480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.67.3e-781074723373
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 +lLl  Aea+++++l la+ ++ rl+++ s++ +    p++Rla yft++L  + ++  ++  + l  +++ +++ s++++a+++++e+sP++kf+h+t
  CA12g08480 107 DLLLMGAEAIEARNLDLASIVVLRLNTILSNQENkenpPIERLALYFTQGLLCKTLN--NSSPHELLNQHQYQTEFSSSMTAFQMLQEISPYVKFAHFT 203
                 789999**********************88777557789***********9877776..23333444444445678999999***************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +   slRiT+++  +++ +  +++tg+rL++fA+++++pf f+ ++ +     ++e+++v
  CA12g08480 204 ANQAILEATQGSQQVHILDFDIMEGIQWPPLMVDLVERGNRNSSLRITALVI-DKTYSFYVKKTGKRLQEFADSINLPFMFDQVLLE-----DFEKIQV 296
                 **************************************************99.67899************************98443.....4577788 PP

        GRAS 197 kp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErel 289
                  + + +l+ n++++  +++++  sl +   ++ + +++lsPk+v +ve+e    ++  s sF+e f+eal++y+++ ds+  +++     + +++E+e+
  CA12g08480 297 VEgHNNLIANVMIHQIYMPQRGSSLVK---TFFNGLRKLSPKLVALVEEElfnlTKIPSLSFVEFFCEALHHYTTISDSILGGFGGGYkLALRVIEKEF 392
                 887999*******99999988888888...********************7554444677********************6666665538999****** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 l+ +i + + +   ++ er+    kW++ l +  GF+++p+s++++ qak+l++ ++  gy v++e+  l l+Wk+rpL+ +S W
  CA12g08480 393 LRVRILDSLRQFPCDKLERE----KWSDGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEQCKLALCWKSRPLTNASIW 472
                 ************99966665....6***987658***********************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.56179454IPR005202Transcription factor GRAS
PfamPF035142.5E-75107472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MELENFQPSC INPFLEYNNL DTTFSWKNPS IDPQCSIQDF VTVVNDVDIL DYFPKDFDFI  60
DGDVDIPLQN VVHGDTEFLI EGQKSRVCNL HLKFLKDQLM EETGVTDLLL MGAEAIEARN  120
LDLASIVVLR LNTILSNQEN KENPPIERLA LYFTQGLLCK TLNNSSPHEL LNQHQYQTEF  180
SSSMTAFQML QEISPYVKFA HFTANQAILE ATQGSQQVHI LDFDIMEGIQ WPPLMVDLVE  240
RGNRNSSLRI TALVIDKTYS FYVKKTGKRL QEFADSINLP FMFDQVLLED FEKIQVVEGH  300
NNLIANVMIH QIYMPQRGSS LVKTFFNGLR KLSPKLVALV EEELFNLTKI PSLSFVEFFC  360
EALHHYTTIS DSILGGFGGG YKLALRVIEK EFLRVRILDS LRQFPCDKLE REKWSDGLYS  420
LKGFRQIPMS SSNVRQAKHL VSLFSGGYWV QNEQCKLALC WKSRPLTNAS IWVPTSSSTS  480
PSSSISF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-4211347627382Protein SCARECROW
5b3h_A5e-4211347626381Protein SCARECROW
5b3h_D5e-4211347626381Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552132.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U8EYE50.0A0A1U8EYE5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y7070.0A0A2G2Y707_CAPAN; nodulation-signaling pathway 2 protein-like
STRINGSolyc11g005610.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-46GRAS family protein