PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g03310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 153aa MW: 17832.3 Da PI: 6.526 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.4e-20 | 20 | 73 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++++LA++lgL+ rqV vWFqNrRa++k CA12g03310 20 KKRRLSVEQVKALEKNFEVENKLEPERKAKLAQELGLQPRQVAVWFQNRRARWK 73 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.7 | 5.6e-42 | 19 | 109 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls eqvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L+ ++e+L +e+ CA12g03310 19 EKKRRLSVEQVKALEKNFEVENKLEPERKAKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLKLDNEALIKEV 109 69*************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.01E-20 | 14 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.653 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-18 | 18 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-17 | 20 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.07E-16 | 20 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-21 | 22 | 82 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.8E-16 | 75 | 109 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MLEGLDEEGC VEESGHVSEK KRRLSVEQVK ALEKNFEVEN KLEPERKAKL AQELGLQPRQ 60 VAVWFQNRRA RWKTKQLERD YNVLKANFDS LKHNYESLKL DNEALIKEVP RHIVLLESRV 120 ENHLSTYQVG VRFGYTEYAV FCSEDMLLVV VQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 1e-114 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016551149.1 | 9e-71 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | Q940J1 | 9e-51 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A2G2Y5D1 | 7e-70 | A0A2G2Y5D1_CAPAN; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | A0A2G3B0M2 | 7e-70 | A0A2G3B0M2_CAPCH; Homeobox-leucine zipper protein ATHB-5 | ||||
STRING | XP_009598097.1 | 1e-62 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 4e-53 | homeobox protein 16 |
Publications ? help Back to Top | |||
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