PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g20080
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 332aa    MW: 37792.5 Da    PI: 7.1986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g20080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0987111126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+ C  f++ GtC+ G+ C+FaHg
  CA11g20080  87 YKTRMCAKFLE-GTCRNGEHCTFAHG 111
                 9**********.*************9 PP
2zf-CCCH24.64.5e-08146168325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 +++C+ f+ + +C+yG++C+F H
  CA11g20080 146 MKICKKFYNGEECPYGEKCNFLH 168
                 579******66************ PP
3zf-CCCH38.42.1e-12221247127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt++C+ +  tG+C++ drC+FaHg+
  CA11g20080 221 WKTKICSKWETTGQCPFRDRCHFAHGQ 247
                 8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-1583119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-984117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.43286113IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-486112IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-687111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7143170IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083143170IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-8146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16216253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-10219252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249220248IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5220247IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8221247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSFSDQPHAP SNFMPMPFSG GDGGDVWPHS PMNHELYESY SQFEHVPFKR MRDSDNNLPN  60
SSTYPAMNSR VNLPNLPGGK GTSHIFYKTR MCAKFLEGTC RNGEHCTFAH GVEDLREPPP  120
NWQDLVREKD RGAENWNDDQ KIIHRMKICK KFYNGEECPY GEKCNFLHER PPKFKNDMLR  180
QRESSAISIG TTGNRSDPEL IEISKHGNAD SDAVHIKPVY WKTKICSKWE TTGQCPFRDR  240
CHFAHGQSEL QMPTGRVDTD MLTNSGPITP RSFSVPLVDS SPHTVVNASI QEEKEEKKNL  300
KWKLSKKICR IYGDWLDDLV PPHLLPSNAD S*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573248.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT815e-81C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2G2YI250.0A0A2G2YI25_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000655850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-75C3H family protein