PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 451aa    MW: 50067.7 Da    PI: 9.266
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19335368134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++C +tkTp+WR+gp g+k+LCnaCG++yr+ +
  CA11g18920 335 CTHCEVTKTPQWREGPLGPKSLCNACGVRYRSGR 368
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-14328391No hitNo description
SMARTSM004016.7E-16329379IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24333365IPR000679Zinc finger, GATA-type
CDDcd002024.62E-15334391No hitNo description
Gene3DG3DSA:3.30.50.107.4E-14334366IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440335360IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17335368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MTMVEHGGYM DGSPNDPIVD DDFEDILNFL DFPMENLEED GVGVEWDSSE SKFLGPIPTE  60
ALMSFPPMPQ GNVRSGRVNA VANSRPTFFI MLLMIRVNNV FELGKIGNGQ VNVMVDFYPP  120
KNNMVYLSGK GKCFQCRIYN RRLGYDRLVA VSANESSLVE IACSQSQSSI MCYSECWTGL  180
ARYMSAIVYA GRDWPVLYYQ IKFTEVQGTT GTFQTQSPVS VLEGSNSCSG GKSIPIKPIK  240
HDTVIPVRPR SKRARPSAVN PWVLMAPISS TRVASKKICD AKKGKEKKRR LPILSGAKES  300
TTCYVQQIND TVPQIPDVSK KKITSTQQSS FVKKCTHCEV TKTPQWREGP LGPKSLCNAC  360
GVRYRSGRLF PEYRPAASPT FVPSVHSNSH RKVVEMRKKS IYGGAVVEEP PKMIIGRKRK  420
ALPEPTIVDD PPMSPAPEFV PMSSYLFDVY *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547861.11e-179PREDICTED: GATA transcription factor 11-like
TrEMBLA0A2G2YHT50.0A0A2G2YHT5_CAPAN; Uncharacterized protein
STRINGSolyc11g069510.1.11e-146(Solanum lycopersicum)
STRINGPGSC0003DMT4000208761e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-40GATA transcription factor 11