PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g14610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28424.5 Da PI: 6.6197 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw++yl CA11g14610 14 KGTWTPEEDRKLAAYITEYGPWNWRQLPKYAGLERCGKSCRLRWLNYL 61 799*****************88************************97 PP | |||||||
2 | Myb_DNA-binding | 60.7 | 3.1e-19 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia++++ gR+++++k++w++ CA11g14610 67 RGNYTEEEDEIILNLHAQLGNK-WSAIAAHLP-GRSDNEIKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.213 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.97E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.95 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-12 | 69 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-27 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVRTPCCDEN GRKKGTWTPE EDRKLAAYIT EYGPWNWRQL PKYAGLERCG KSCRLRWLNY 60 LRPNVKRGNY TEEEDEIILN LHAQLGNKWS AIAAHLPGRS DNEIKNHWHT ALKKRANNSG 120 ESSKKCNSKN NIRRSTTVAN KNASPSTSHE NIVLESSQWS PKESSSEDFF SYSNTDYQEQ 180 HKVFQQEALD EITSGSFWTE PFLVESFNTT GTDFLAPPID YCGLVCPPSP FIGHEFLSSF 240 DFDYFNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-29 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 9e-43 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579451.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9LE63 | 1e-57 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A2G2XZS3 | 0.0 | A0A2G2XZS3_CAPAN; Transcription factor MYB39 | ||||
STRING | Solyc07g053230.2.1 | 1e-125 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 5e-58 | myb domain protein 41 |