PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g06150
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 265aa    MW: 29053.3 Da    PI: 7.1825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g06150genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10148195455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  CA11g06150 148 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALVLDEIINYIQSLQ 195
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.72E-10142199No hitNo description
SuperFamilySSF474591.96E-17142210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18144216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-8148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPQTSLINH AGGFQSPPPP PFNLADIWQF PGNAGGNATA YSFPVSASAV AAVEQEHNMS  60
DVPENDPMRR ARKRREDDEC AKGVSTSGNG LTESDSKRLK ATRLNENCEA RCDGEGNSRK  120
SAEQPAKPAE PPKDYIHVRA RRGQATDSHS LAERARREKI SERMKVLQDI VPGCNKVIGK  180
ALVLDEIINY IQSLQHQVEF LSMKLEAVNS RAASIEGFRS KDFGHQTFDP NAMAFGSQAT  240
REYARGTSPE WLHMQLGGGF ERTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16875RRARKRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139790.0BT013979.1 Lycopersicon esculentum clone 133024F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548517.10.0PREDICTED: transcription factor bHLH79
SwissprotQ69WS31e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2G2YDW50.0A0A2G2YDW5_CAPAN; Transcription factor BPE
STRINGPGSC0003DMT4000582041e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-83BIG PETAL P