PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g05650
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 152aa    MW: 17800 Da    PI: 6.8044
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g05650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-194194356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++ ++q++ Le+ Fe +++++ e++ +LA++lgL+ rq+ +WFqNrRa++k
  CA11g05650 41 KKRRLLPNQVQFLEKSFEVDNKLDPERKVQLANELGLQPRQIAIWFQNRRARYK 94
                45578899*********************************************9 PP
2HD-ZIP_I/II126.41.2e-4040131192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl  +qv++LE+sFe ++kL+perKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+e++
   CA11g05650  40 EKKRRLLPNQVQFLEKSFEVDNKLDPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDVLKASFDKLKADYDNLFKENEDLRNEVS 131
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8763696IPR001356Homeobox domain
SMARTSM003892.4E-1939100IPR001356Homeobox domain
SuperFamilySSF466898.98E-1940106IPR009057Homeodomain-like
CDDcd000862.07E-164196No hitNo description
PfamPF000461.5E-164194IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1944103IPR009057Homeodomain-like
PRINTSPR000313.9E-66776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000313.9E-67692IPR000047Helix-turn-helix motif
PfamPF021833.8E-1596131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVNFEDGGRG EIAKERPFFP AIDKEETGND DYDSCFHHPE KKRRLLPNQV QFLEKSFEVD  60
NKLDPERKVQ LANELGLQPR QIAIWFQNRR ARYKTKVLEK DYDVLKASFD KLKADYDNLF  120
KENEDLRNEV SSNSLQNQHS RLALQLPKGF I*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-142HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548225.13e-90PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-40HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1U8EXU36e-89A0A1U8EXU3_CAPAN; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2G2VM046e-89A0A2G2VM04_CAPBA; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2G2YE116e-89A0A2G2YE11_CAPAN; homeobox-leucine zipper protein HAT5
TrEMBLA0A2G3B8026e-89A0A2G3B802_CAPCH; Homeobox-leucine zipper protein HOX16
STRINGPGSC0003DMT4000454711e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-42homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]