PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA11g01060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26716.4 Da PI: 6.8739 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.2e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C l+p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q +q+++e CA11g01060 4 SCNGCRVLRKGCSETCSLRPCLqwirsPESQANATVFLAKFYGRAGLINLINAGPHHLRPAIFKSLLYEACGRIINPVNGSVGLMCSGNWQRCQEAVES 102 6***********************************************************************************************998 PP DUF260 95 allk 98 +l + CA11g01060 103 VLNG 106 8765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.029 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSETCS LRPCLQWIRS PESQANATVF LAKFYGRAGL INLINAGPHH 60 LRPAIFKSLL YEACGRIINP VNGSVGLMCS GNWQRCQEAV ESVLNGSTIV QVPINDESNN 120 NNTDQIVPLK SCDIRHIAKN SSNTEQVIRT RNGRFKRKAN NSVAEEAAEE YLMTNEPPSK 180 FSITGWDQLN EMDELKRAPS HDSFSVETVE PTLLVNRVDP VKLEENGDVG LELTLGLMSP 240 I* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-44 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548850.1 | 1e-179 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 2e-71 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A2G2YC73 | 1e-178 | A0A2G2YC73_CAPAN; LOB domain-containing protein 40 | ||||
STRING | PGSC0003DMT400037711 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-72 | LOB domain-containing protein 42 |