PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g19590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 274aa MW: 30255.4 Da PI: 8.4628 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 211 | 233 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L++H ++ H CA10g19590 211 QCPQCSLRFSSVTALVSHVQKvH 233 7******************9988 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 245 | 267 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H CA10g19590 245 VCPRCSKGFRDPVSLVEHVEKeH 267 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 2.04E-11 | 4 | 57 | No hit | No description |
PROSITE profile | PS51039 | 7.687 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.6E-10 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 7.2E-5 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.1E-12 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 2.1E-10 | 90 | 147 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.96E-9 | 93 | 146 | No hit | No description |
PROSITE profile | PS51039 | 7.884 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.019 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.7E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.011 | 210 | 233 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 6.8E-4 | 211 | 233 | No hit | No description |
SuperFamily | SSF57667 | 1.84E-5 | 211 | 263 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 212 | 233 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.203 | 244 | 272 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7 | 244 | 267 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 246 | 267 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGTPEFPNLG KHCFVDECRQ IDFLPFTCDC CHQVFCLEHR SYNRHNCPTA NKNDVSVVVC 60 PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREIL TFSNIIKCRE 120 CTIDHCLKHR FGPDHKCPGR KKPESSAFPF VNFRSGSRQA EPKKAPATSS SSWTSTFFKA 180 AEAGMAKLGS GRGQSSNATN HSGRASGQVE QCPQCSLRFS SVTALVSHVQ KVHEKNGVMN 240 LTVDVCPRCS KGFRDPVSLV EHVEKEHKGT SKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016543719.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
Swissprot | Q8VZ42 | 1e-119 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A1U8EIL5 | 0.0 | A0A1U8EIL5_CAPAN; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A2G2YNR8 | 0.0 | A0A2G2YNR8_CAPAN; zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
STRING | PGSC0003DMT400060887 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-117 | C2H2 family protein |