PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g10120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 190aa MW: 21342.2 Da PI: 10.8835 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.7 | 2.2e-40 | 63 | 141 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.EEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.fhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr fh lsefD++krsCr+rLa+hn+rrrk+q+ CA10g10120 63 RCQVEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRlFHLLSEFDNGKRSCRKRLADHNRRRRKNQQ 141 6**********************************************999**************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-33 | 57 | 126 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.667 | 61 | 139 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.15E-37 | 62 | 143 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.8E-30 | 64 | 138 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MVVPKSEPQF VSAGGIDFGS SSSSRIGLNL GGRTYFSSSE DDFVNRLYRR TRAVEAGSVN 60 TPRCQVEGCS ADLTHAKHYH RRHKVCEFHS KASTVIAAGL TQRFCQQCSR LFHLLSEFDN 120 GKRSCRKRLA DHNRRRRKNQ QANLENSSKS QLESTRNSSS DSLASKFLIQ VLILIFLIRK 180 KAKKYSSII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-31 | 56 | 138 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545867.1 | 1e-115 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 1e-69 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A1U8EF59 | 1e-113 | A0A1U8EF59_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YL66 | 1e-113 | A0A2G2YL66_CAPAN; squamosa promoter-binding-like protein 8 | ||||
STRING | PGSC0003DMT400074976 | 1e-100 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4846 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 9e-72 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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