PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g08690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Dof | ||||||||
Protein Properties | Length: 327aa MW: 36445.9 Da PI: 6.3615 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.8 | 4.2e-37 | 15 | 70 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++ CA10g08690 15 PACPRCGSTNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRG 70 57**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-23 | 7 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.556 | 15 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 16 | 69 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 17 | 53 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MERGTIWKSN VELAPACPRC GSTNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPI 60 GGGCRKSRRG KSSSNIIHNH HHHELISRNL GHGVCLNPTN IDHHNQSTSS SLDHHHGPSI 120 DLALVYSNFL NSTNSKSSQP EDRQNPELPD DLLLPDQGVL VTPSFELSSM IDMEFVNSEL 180 GQESRLLGAG AGDGVDFYFS GIHEEKQNVM NHSDVHHDHY TNINVNANNS INRDHQLGNN 240 NYMELPPLPS EDIMWSNSHD HQYHHMVFPN DLLSTSHNLT TGVSSEAEPE PEPESAIQNP 300 SHDHSANNAN DGSLFNLSNF GNIFKP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561878.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A2G2YK84 | 0.0 | A0A2G2YK84_CAPAN; Dof zinc finger protein DOF3.7 | ||||
STRING | PGSC0003DMT400055052 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12963 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-34 | Dof family protein |