PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g08130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SRS | ||||||||
Protein Properties | Length: 204aa MW: 23222.1 Da PI: 8.141 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 181.9 | 2.7e-56 | 16 | 154 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 +CqdCGnqakkdC + RCRtCCksr ++C+thvkstW+p++ rr r+ l++ ++ ++kr re+++ ++ +s + ++ ++ + CA10g08130 16 YRRCQDCGNQAKKDCPFLRCRTCCKSRRYQCQTHVKSTWIPVSTRRPRH--LSTI--------QQPNPKRYRENQNPAALYISFLLIFETLQP-IEGEE 103 568********************************************83..3332........345677888874444455555555555555.44566 PP DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +lP+evs +avfrcvrvss+d+ +++aYqt+v+i+GhvfkGiLydqG+++ CA10g08130 104 ELPAEVSLPAVFRCVRVSSLDNLVDQYAYQTSVNIAGHVFKGILYDQGPDD 154 7************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.6E-54 | 17 | 153 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.7E-25 | 19 | 60 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.0E-25 | 105 | 152 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MRSEDDQGIT ISSSNYRRCQ DCGNQAKKDC PFLRCRTCCK SRRYQCQTHV KSTWIPVSTR 60 RPRHLSTIQQ PNPKRYRENQ NPAALYISFL LIFETLQPIE GEEELPAEVS LPAVFRCVRV 120 SSLDNLVDQY AYQTSVNIAG HVFKGILYDQ GPDDDDNIPK ETSSRGFHQH LLTTNLTTPS 180 TSYPTPFTNF MPGTQYFQCP KSS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 7e-46 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027767833.1 | 8e-87 | protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A2G2YLA7 | 1e-150 | A0A2G2YLA7_CAPAN; Uncharacterized protein | ||||
STRING | Solyc10g054070.1.1 | 2e-82 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-49 | SHI-related sequence 5 |